cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK101092     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0107300 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 429697 -  431874  ( - );   2178(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 429697 -  430480 ( - );   784 (bp)
Exon 2 Location 430576 -  431874 ( - );   1299 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0107300 Os03t0107300-01 J033024M24 211934 J033024M24 5228 LOC_Os03g01700.1 AK101092 36380 AP008209.2 255674134 BAF10605.1 113547162 NC_008396.2 297602023 NM_001055226.1 115450180 NP_001048691.1 115450181


Chromosome: 3 ,  position: 429,697 - 431,874 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tcagcagcgc atgcactagc agcttagcta ctgcgcgcgt accagagaga gatcatcagc 
000061 tcaagtagct aagctagcta taatctgcta gctagctcga tcagacactt aattacctgc 
000121 taggtggtgg tcgatcgaag aagaagaaga tgagtgagct tgcgtcggcg cccaaggtgg 
000181 cgcttggatc gatcgcgttc gcggtgttct ggatgatggc ggtgttcccg tcggtgccgt 
000241 tcctgccgat cgggcggacg gcggggtcgc tgctgagcgc ggtgctgatg gtgatattcc 
000301 acgtgatcag ccccgacgac gcgtacgcct ccatcgacct cccaatcctg ggcctcctct 
000361 tcgccaccat ggtggtgggc agctacctcc ggaacgccgg gatgttcaag cacctggggc 
000421 gtctgctggc gtggaagagc cagggcgggc gcgacctcat gtgccgcgtc tgcgtcgtca 
000481 ccgccctcgc cagcgccctc ttcaccaacg acacctgctg cgtcgtcctc accgagttcg 
000541 tcctcgagct cgccgccgag cgcaacctcc ccgccaagcc cttcctcctc gccctcgcct 
000601 ccagcgccaa catcggctcc gccgccaccc ccatcggcaa cccccagaac ctggtcatcg 
000661 ccttcaatag caagatcacc ttccccaagt tcctcatggg aatcctcccg gccatgctcg 
000721 tcgggatggc cgtcaacatg gtcatgctgc tctgcatgta ctggagggag ctgggcggag 
000781 gggccgagct cagcgtcgac ggcaagcaga tggaggcggt ggaggaaggc aggtcgccgg 
000841 cgtcggccaa gagcacgccg cagctgaacg gcaacggcaa cacgatgatg tcgctggaga 
000901 tgtcggagaa cataacgacc aagcacccat ggttcatgca gtgcacggag gcgcggcgga 
000961 agctgttcct caagagcttc gcgtacgtgg tgacggtggg gatggtggtg gcctacatgg 
001021 tggggctcaa catgtcgtgg acggccatca ccacggcgct ggcgctggtg gtggtcgact 
001081 tccgcgacgc cgagccgtgc ctggacaccg tgtcctactc gctgctcgtc ttcttctccg 
001141 ggatgttcat caccgtcagc ggcttcaaca agacgggcct cccgggagcc atctgggact 
001201 tcatggcccc ctactccaag gtcaacagcg tcggcggcat ctccgtcctc tccgtcatca 
001261 tcctcctcct ctccaacctc gcatcaaacg taccaacggg taattataca ttctattaat 
001321 ccagaattaa tgtatactac tccatataag tataactaat taacatacaa aaatatatat 
001381 gcgcatgcat gcagtgcttc ttatgggtga tgaggtggcg aaggcggcgg cgctgatatc 
001441 gccggcggcg gtgacgacgt cgtggctgct gctggcgtgg gtgagcacgg tggcggggaa 
001501 cctgtcgctg ctggggtcgg cggcgaacct gatagtgtgc gagcaggcga ggagggcgcc 
001561 caggaacgcc tacgacctca ccttctggca gcacatcgtc ttcggcgtcc catccaccct 
001621 catcgtcacc gccgtcggca tacccctcat cggcaagatc tgatctcatc tcatcgaccc 
001681 atccaaatta attaattatg agatcgacaa acatccaagc ttgctaggct cgtcgtcgtc 
001741 gtcgtcgacc accgtaccat atatatgcat gcatgccacg cacgtatata tatgctcctc 
001801 aacctcaagt caattaatta agagaatgga tgaatgaatc aatgttgtgt atgatttcct 
001861 ttttgttttt gttttaccca ccgtatatgt gctgtgtggt gtatggccgg cgagcttgaa 
001921 attgaattgg ccttgcttgc atgcatgcat ggtgatcaga tcagctcagc tagctagcta 
001981 aatcttgctt aattttatca agtgtcaatc atgatgagaa gagagggaac tagatggagc 
002041 tagctagcta gcaacacatg cagtgtgtgc taagcagtgc actctgcatg cttaaatttg 
002101 cttgcttaat tcaacatcgt attacatgta tgttgatatg tgcatgttcc tcaaaataca 
002161 tggaaaaaaa atgtttct

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AV930870 rbasd25j12 643
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ685501 whpc20g11 664
more... (Total Hit Count: 24 )
/rice/oryzabase