cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK069703     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0840800 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 36248744 -  36253445  ( - );   4702(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 36248744 -  36249091 ( - );   348 (bp)
Exon 2 Location 36249518 -  36249721 ( - );   204 (bp)
Exon 3 Location 36249839 -  36250009 ( - );   171 (bp)
Exon 4 Location 36250265 -  36250413 ( - );   149 (bp)
Exon 5 Location 36250743 -  36250890 ( - );   148 (bp)
Exon 6 Location 36250977 -  36251045 ( - );   69 (bp)
Exon 7 Location 36251130 -  36251390 ( - );   261 (bp)
Exon 8 Location 36251586 -  36251780 ( - );   195 (bp)
Exon 9 Location 36252135 -  36252262 ( - );   128 (bp)
Exon 10 Location 36252389 -  36253445 ( - );   1057 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0840800 Os03t0840800-01 205438 J023027C22 4905 LOC_Os03g62410.1 AK069703 31878 AP008209.2 255674134 BAF13763.1 113550320 NC_008396.2 297602023 NM_001058384.1 115456496 NP_001051849.1 115456497
Os03g0840800 Os03t0840800-01 205438 J023027C22 4905 LOC_Os03g62410.2 AK069703 31878 AP008209.2 255674134 BAF13763.1 113550320 NC_008396.2 297602023 NM_001058384.1 115456496 NP_001051849.1 115456497


Chromosome: 3 ,  position: 36,248,744 - 36,253,445 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cgtgcccccg cccgcgccgc catctctctc cttcctcctg tattgttacg caagccatcc 
000061 gagccaagca ggagaagagg aagaggaaga ggaagaggaa gagcatgccc ccctgcgcgg 
000121 catggggaaa agctccgccg acttgtccgc ctcctcggag tcggccgtgc tcctgcacgg 
000181 cgacctcgac atttggataa ccgaggccaa gtgcctcccc aacatggaca tcatgtcgga 
000241 gcggatgcgc cgcttcttca ccggctacgg cgcctgcggc tcctcgtgcg gcggcaccgg 
000301 cgacaacgcg cgccgggccg gcggcggcgt caggcccaag aagatcatca ccagcgaccc 
000361 ctacgtctcc gtctgcctcg ccggcgccac cgtcgcgcag acgcgggtca tccccaactc 
000421 cgagaacccc aggtgggagg agcgcttccg cgtcgaggtc gcccacgccg tctccaggct 
000481 cgagttccac gtcaaggaca acgacgtctt cggcgcgcag ctcatcggcg tcgcctccct 
000541 ccccgtcgac aggatcctct ccggcgcccc cgccgagggc tggttcccca tcgacggcca 
000601 ctgcagcagc aaccccatgc ggccgccgcc ggagctccgc ctctccgtcc agtacaggcc 
000661 catcgacgac aaccccctct acaggggcgg cgccggcgcc gtccccaacg cctacttccc 
000721 tctccgccga ggtggcggcg tcaccctcta ccaggacgcc cacgtcgccg acggcggcct 
000781 cccggccatc cagatcgccg gcggaagggc gtacgagcac ggccgatgct gggaggacat 
000841 ctgccactcc atcgtggagg cgcaccacct cgtgtacatg gtcggatggt ccatctacca 
000901 ccccgtcaag ctcgtcaggg agcccacccg ggcgctcccc ggcgagacgc catcgacgct 
000961 cggcgagctt ctcaagaaaa gggctcgcga gggcgtccgc atcgtcatct tgctctggga 
001021 cgacaagacg tcgcatgaca agttccttct caaaacggta gtatatctat ctatcatctt 
001081 ttttatatcc tttcttcttc ttcttcttca gttgtactct ctgatgaatt gatatcgtca 
001141 aactcacaag aattcggaaa tgatattgtg agaaataatt caggttgaat gcaggatggt 
001201 gtcatgcata cacacgacga ggagaccaaa aagtttttca ggcattcagg tgttcactgt 
001261 gtgctggttc ctcgctatgc cagcactaag cttagcattt tcaagcagca ggtcagaaat 
001321 ctttgtctga tatagcgcta taatttaact gcctcattag ttattactag tacatgaaca 
001381 taagtatagt aattacttgt tattgaatat aatacctact agtacacact atccaattat 
001441 gcctgctttt acaaatcaca tacaagtagg ttctcactag ttcatgttct gttgcttatc 
001501 tgcatttgtc aggatgaata gtcctgatgt tctttctgag tctgagaaag ctacactaaa 
001561 tattcatgca gcaaactcat gccttaccat ttgttcattt gcctgttaat agttcataaa 
001621 aaacctttcg atgatgcttg ctaatgtaat atttctcttc tccaggtagt gggaacttta 
001681 tttacacatc atcagaaatg tgtgcttgtt gatacacaag ctactgggaa caaccgcaaa 
001741 atcactgctt tcattggtgg tctagacttg tgcgacggca gatacgatac acctgaacat 
001801 aggcttttca aagatcttga taccgctttc aacaaggact tccataatcc tacatttcct 
001861 gtaagttctc cagttcataa gctgttatca gatcatggag ttccttcata gatgtttaca 
001921 caaattcatg tgaattgcta aatatctcca taaaatgtat tggcagcacg ttgtacaatc 
001981 tgacttttct ataaaatata tcttctctat ctgataagaa tatgaacgcc gaggatcctt 
002041 tctcctgatc tacaggttaa ttcatatgga ccaagacagc catggcatga tttacactgc 
002101 aagattgagg gccctgctgc ctttgatata ctgacaaact ttgaacagcg gtggagaaaa 
002161 gcaaccaaat ggaaggtcaa tcttaagaaa gttgcaagtt ggcatcatga cacgctgata 
002221 aaaataaacc ggatgtcctg gattgttacc ccagctgcag atgaggctaa tgcacatgtt 
002281 tgtgaagaaa aggacccaga aaattggcat gtgcaggtat aagactttgt tttagtctta 
002341 catgaactac agtaacatct tagatggtac ttcctcatac ttattttggt gctcggctag 
002401 gtgttcaggt caattgattc aggttctgta aaggggttcc caaaaattgt tcaggaggca 
002461 gagtctcagg ttagtgtcct ttgccatgca ccacagcacc agctaaaagt gcatctttca 
002521 acaattgttt agttattttc ccttttcttc tgcagaatct tgtctgtgca aagaatctaa 
002581 agatcgacaa aagcatacac agtgcatatg tcaaagcaat caggtctgcg cagcacttca 
002641 tatacattga gaaccagtat ttcattgggt catcgttctt atggtcctca cataaaagcg 
002701 caggtaaatc tgtcttcagt tctgctttag gtgaagctta tgaaatgcca tttcactaca 
002761 aatttctttg cttggcaacc aacagttaac atcttgtagt tgtagacttg atcagcctaa 
002821 caatcacata catgtttatg ctatgacttg cgaacagcaa ttggattgtt cagatgcacg 
002881 atggcaaacg acacattaga acctgaaaat ggcataagag atagtaggat tagtgtttca 
002941 gtacctgtca ggctgtttgt tactcacatt tggtaatgac tacaagggca ttctgcattc 
003001 atattacgat tggaatgctc tggtgagatc aggtgctgat aacttaatac ctgtggagct 
003061 ggccttgaag attgcaagca agatcaaggc aaatgagcag ttcgcggtgt acattgtcct 
003121 accaatgtgg cctgaaggca tcccaaccgc ggcaccgatg cagcaaatcc tcttttggca 
003181 ggtctgcagg catttattca tgcaaataac tactacctcc gtttcaggtt ataagacttt 
003241 ctaacattgc ccacattcat atagatgtta atgaatctag gcacacatta acaaatgaat 
003301 ctagacacat tcatttgtgc ctagattcat taacatctat atgaatgtgg acaatactag 
003361 aaagtcttat aatataaaac ggaggaagta caaattaatt aagatactga tgttttgatc 
003421 tggtattctt ttgaagagcc aaacaatgtc tatgatgtac aagatcatag cggacgctct 
003481 gcagatgcag ggattggttg aagctcaccc tcaagattat ctgaatttct actgcctcgg 
003541 caagcgcgag gtcgccgccg gtgacagcat gtcccagacg agcttatgca atgacaactc 
003601 cactctggta cagtacagca gcaggatact actccgtagt ccgtagtagg taaatgtatt 
003661 actactacgt gtggtgaaat actcgtggct gatcattgtt gcaaattaac aatcatgcat 
003721 ccagcgctcg gcacagaagc tccggagatt catgatctat gtgcactcga aagggatggt 
003781 ggtggacgac gagtacgtca tcatcggatc ggccaacatc aaccagaggt ccatggaagg 
003841 ctgcagggac accgagatcg ccatgggcgc ctaccagcca cactacaagt ggtctgctga 
003901 tcacggccaa ggccctcctc gtggacaggt acagttcatc caaagagctt cattacgatc 
003961 gatgacgaga gagagagaga tgtgtgtttg cattgcagat gtagagaaac gaggattttc 
004021 ttgctaactc cacaaggtgt tgaactagcc aacctaggtt caaaagcctc acccctttta 
004081 attatttgat attaggtagg gttcactcta tcggttttag cccatttgat cggagttcac 
004141 cgaaatcccg aaatttcgga aattttggtc cgaaattttg aacaaaattt agttgaattt 
004201 gaacaaatat taccaaaatt cacgaaaaaa attaaaaaaa tttagccgaa gtaatatcgt 
004261 atcggagggg accaaaatga ccgaaatttc ggttcgaaat ttccaactct gatattaggt 
004321 tattcactaa tattcacttt tttttgcatt gcaggtgtac gggtacagga tgtcgctgtg 
004381 ggcggagcac cttggggcgg tggaggagtg cttcgggcgg ccggagacgg gggagtgcgt 
004441 gaggcgggtg agggagatgg cggaggagaa ctggagggcg tacgtgtcgc cggagatgga 
004501 ggagacgaag gggcacctga tgtgttaccc gttgaaggtg gacaaggacg gccgcgtccg 
004561 ctctctcccc ggccacgact gcttccccga cgtcggcggc aaggtcctcg gcactcaaac 
004621 ctcgctcccc aatgccctca ccacctagta cctgtaccat atcccgcgtg aatatgaata 
004681 tgaatgaatg ccactgtttt gt

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ656232 whgc5l08 695
more... (Total Hit Count: 5 )
/rice/oryzabase