cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK065788     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0118300 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 1045604 -  1052166  ( + ) ;   6563(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1045604 -  1047136 ( + ) ;   1533 (bp)
Exon 2 Location 1047358 -  1047423 ( + ) ;   66 (bp)
Exon 3 Location 1047736 -  1047795 ( + ) ;   60 (bp)
Exon 4 Location 1048159 -  1048249 ( + ) ;   91 (bp)
Exon 5 Location 1049163 -  1049217 ( + ) ;   55 (bp)
Exon 6 Location 1049308 -  1049371 ( + ) ;   64 (bp)
Exon 7 Location 1049498 -  1049624 ( + ) ;   127 (bp)
Exon 8 Location 1049712 -  1049796 ( + ) ;   85 (bp)
Exon 9 Location 1050375 -  1050466 ( + ) ;   92 (bp)
Exon 10 Location 1050947 -  1051200 ( + ) ;   254 (bp)
Exon 11 Location 1051592 -  1051680 ( + ) ;   89 (bp)
Exon 12 Location 1051768 -  1052166 ( + ) ;   399 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXpro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0118300 Os01t0118300-01 J013041H16 201171 J013041H16 1113 LOC_Os01g02890.1 AK065788 32786 AP008207.2 255672756 BAF03773.1 113531390 NC_008394.4 297598437 NM_001048394.1 115434201 NP_001041859.1 115434202


Chromosome: 1 ,  position: 1,045,604 - 1,052,166 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 attctgctaa aaatttcatc ttggggggta tatttctcat attttagttc atgccgccgc 
000061 cactatgtac taatcccacc atagcagctc atagtattct ccattgcaat cctgtcgtct 
000121 atttgtattt gttttttgtt tgttagtatt agggtgcttt tgggtttggg gtttctgcca 
000181 ttgacggtta cctgaagagc tctcgatgaa gcggttcttt tttattttat tttattttcg 
000241 gtgcctagtg aaatacagtg gtggttttga atcattcctg ggagttccct ggtggttttg 
000301 actgatcaaa acgctacatt ttttttatgt ttatgttccc tgttgttgtt tcttgcccaa 
000361 atgcagattc actcttgcat ttgtttctct tgatttcctc tgctgttttg ctctacaagg 
000421 acagaggact tagtctgctt gttcgtcagc cttgcaggaa aaaaaatgca gtaaaaaacc 
000481 tgtctattgc gattactttg tgttcatctt ggggcgctct tattatgcgt gggaatcacc 
000541 agcagagttc atccgatttg atgcgcgcat ctctaattcc catcttttgc agcattgcaa 
000601 aagctgctgc cttttagctt ttgcgctttc ttaattagga ggggttgtac ggcgcccctg 
000661 ttggacctga ttacttccac agtaattgca tcatgacatt ttattccttt ttaatcgttt 
000721 ccttttgcta atctttttaa gtacaaatgg agtttccccc caaaaaaata ttgcaaatgg 
000781 agtttttttt tccccttctc ctctcgcctt ttgctgtttc aggtttcgta tgttatcttc 
000841 acatcaatgc agcctttaat tgcagcagac cacccttctt tgctactagt atgggaaaaa 
000901 aaaatcagag ccacacgaac tgtgggtatt tgctatggga acttcacaag ttcgccagca 
000961 atacaacttg aatgcgtcct gaagatctag attccgcagg tcaaatcgtc gaatttcaga 
001021 gctagtagta ctgtaggctt gcctggtgca actgtgggtt atgcttcaat agcctttaac 
001081 tgtgggttaa tgtgtagagt atatgtcaaa tacagaattt ttacttgaag aagatgtgtt 
001141 tattttcaga tgtgttggac catttcatgt tgtccacttg taggtacttt cgtggcctaa 
001201 gtagtacatt attcagttgt tagttatttg tctcactgaa tgcaagtgta tctttagtaa 
001261 gagttggact gcattgtact tgttttaatc ttcttgaagg ccagtaagaa tttgtactct 
001321 aatacaaaat tgtggaaatt ttacagataa taagctgcta agaattatca ccatggaggt 
001381 caatggtcat cacaaaccaa gaagagaata taatggccga gagtgcaatg gtgtacaatc 
001441 agtaaacaat tttggcgata tcgatccatg gacagcatgg gcatacaaac cgcgcacagt 
001501 ttcattgcta ctgatgggaa catgcttttt aatgtgagat cagaatcttt atctgtggat 
001561 tttttttaaa gattttaaag agcattttaa taatcaaggt gttttatgca tttgttagtg 
001621 ttggcctacg gcaccttttt gaaatatgtt ttattttctt cagtttcgac cattgttagg 
001681 actatcaaca agatatttag gacttgcaaa ggtgctctat gtttaacaga aatttaattt 
001741 acattcttta tcagttgggc aagtggtgct cttgatccag aaagaagctt ctctgttgac 
001801 cgcgtttcat ctgttaaaag gtattctact catccaggtt agacggtagt tgtttttacc 
001861 attcactcac taattggaca tctttaaaac tagtgttacc tggtcatctg tgttcaaaat 
001921 attttttatt gaaatcacac gagtcagatc catagcagat ttcatgtgtt gatgtttttt 
001981 ttgctgcact agacacgcaa attctagtcg gtttccaacc acatgagtgt tcattttatt 
002041 tttaccatca tttttctcaa caatttatct gttgattatc atttaaggat tcctttttgt 
002101 tgatatgtca tatgtttctc ttttattgac aggggtgtct ttgcaatgat tgctgttttt 
002161 ttggcttatt catttcttca ggcaccttct acgtgagtca cataaacccc ttatccgaac 
002221 tctgattatc gaactctgtt tatggtaggg atggccgtgc agatataaat aatgctattg 
002281 cacattgata tggaacagaa gggggtacgc gttcctgcgt actccatttc tgaaaataac 
002341 ttttcaatat cactgaggaa ttgtatcatt ttcctagatg tgttactttt atcatgaaac 
002401 tgaaataact tcataaattc tcctaaataa cagttttaat ttaaaaatcc cttgaaagtg 
002461 aggcactgtt ccatttccta aaaatataac ctcattgggg gcttctctgt aattttgttt 
002521 aacatttact tatatttatt tatactatga ttcagtgtac ttattagacc acatcctgcc 
002581 atttggcggc tggtccacgg gatggcagtt gtttaccttg ttgctctaac ttttttgctt 
002641 ttccaggtaa gtacagcttt ttcttattac tcttgctcaa cacattttta ttggatcatt 
002701 gatattcatg gattattaag gcattgcatt cttttacttt ttttatctct tccacataac 
002761 cttataatat caacttcttt tctaatgaac ggcatagaag tccctgtctc agtttctcgt 
002821 ttaattgatt agcataagga attgcactgt gcactaatac ctcacttccc tcttgattcc 
002881 aaccaaaaat aggttatttt tattaaagga aaaaagagtc gtcattggca ttacacatca 
002941 gcagcagaag atgaggttac caatgtcaaa agtttaacag tataactata ggtgaacata 
003001 gatcagtttg gaactaggat gactcaagag attaacacac attggaaaga aaagcctggt 
003061 atcccatttt tatgttaccc tgggaacttt tttagtcaat aggaagcttc ccagaaatgt 
003121 tttcaagtca tccaactaat tgcgattagt catcctagtc ggtactaagg caacttgatt 
003181 ctaaccacga ttgatcggaa agtctcctaa ttagtcgcga ttagttatga ttaatcatcc 
003241 tagtcggtac tgaggtgatt ttcctcgagt ttccgatttg aaaacatgct gccttgttgt 
003301 ggtttactcc tagaggtagc tagtcaaagt gccaagagac tattctcccg tatctttact 
003361 attgtgctat actggtccat gttgcatgca ccagatgaga caatgtctca aaaagtgagg 
003421 gtcttgttat aaatattttt tttcttctca aatacgcaag agaattgtgc atcattggtc 
003481 ttgttataaa tatcataaaa gagagaacaa aacctgtagt ttgcatggga ttcatactct 
003541 gttccactta atcttgcaga cccgtgatga tgctaggcaa tttatgaagt atcttcaccc 
003601 tgatcttggt gttggtaatg aatttaattt ccatatatga tctagcagtg cagagttatg 
003661 tgattggaaa aataaaaacc tgatttttac ccacctttga gcagaattac ctgaaagatc 
003721 ttatggaacc gactgccgca tatatgtacc tgatcatccg aaaagcaggt ttaacaatgt 
003781 ttatgtatga ctccattcac caacttgctt ctcctttttg ttctatttga tttaccttaa 
003841 aactccagtt ctgcaaagtc ttggagatgc ttcaagttac tgatttgaat ataggtttct 
003901 ctaggagatc ctttttgatg agtttgttat tgcccatatc cttggatggt gggggaaggc 
003961 tataatgata agaaaccaac cacttttatg ggtattatca attggctttg agctaatgga 
004021 ggtatgcatt taatcttaca cgatcaattt atttttggct tctgtcttct gaatctagat 
004081 tccttacata gtttcacatg tcctgcagct cacctttcgc catatgctgc caaactttaa 
004141 tgagtgttgg tgggatagca tcgtactaga catattaatc tgcaattggt ttggtgagat 
004201 tttttatatt ttatcagtat ttttaatata caattctcat ttcctttaaa tgtagattag 
004261 acaccctcat tcagtttatt cagaaatcat ttttttgttt attggcttct ttctttattg 
004321 tggttgtata agctgctgga gtagtatctt ctgatttact gaaacctcat tcagaatttt 
004381 gtaccttagc atattaaagt taatcatggc aaacctatgt ttcacattgt tttgcttatc 
004441 tctttctgca aatcgctaag acagaatatt agtgttttaa tagttttgtg atgtattaga 
004501 catcttttaa atgctaagtg tacctatggt atttcactag ctatttcgta tgaagttgtg 
004561 cgctataatt gttactttaa atgctaagat atttcatgtg attaaaattt cgggacagtt 
004621 ttcatgcgaa tgtctgtctt tacctctatt cgttagcctc ccataagttt gattcttctc 
004681 tgctgcaaca tcgtgttatg tatcttttgc ttgagtaata gagtgacagt tgctttcaac 
004741 tcttcctgac tgggaccctt atttggttta ggtatttggg ctggaatgaa gactgtgaga 
004801 tactttgatg ggaggacata tgaatgggtt ggtttgagtc gtcaacccaa tattatcagt 
004861 aaggtatgct cattagatgt caaggggaat gaagttgccc agcaaagcat atggtggcat 
004921 tatacttttc ttttttttgg catctgtccc atttttatgc agtgcattgt gttgtatatc 
004981 ttgccttagt atcatattaa ggtgattaac tctaatacag gtaggattta ctgagaaacc 
005041 aacacaattt gtcattagtt gtctaattag cccaatatgc accatactgt taggtacctg 
005101 taaatacatg tataaaatga aaatattatg tgtgtgacgt ttatatcttg actttcaaat 
005161 ccggtttttt ctatgcatag gttaataccg tactacggta tagtattaaa ctcaaccatt 
005221 aatttttccc ttgaatgtta tatgctatgt tctgtatttc tagtgcttcg aattatttgt 
005281 tcttgatctt tatattgtta gcctttcccg tgagtgcata tttcaccttt tgcttctcca 
005341 taggtaaaaa ggacgctagg ccagttcaca ccagcacagt gggacaaaga tgagtggtac 
005401 cctctgcttg gcccttggag attcatccag gtgctgagcc tatgtattgt tttcatgatt 
005461 gttgaactta acacattctt tctcaagttc tgcctttgga ttcctccccg aaaccccttg 
005521 attgtttacc gacttgtcct ttggtggtta attgcgatac caaccattcg cgagtacaat 
005581 acatacttac aagacaggtg aatattgaac tccctaagct tctttttttg aatgtatgaa 
005641 cttaattagc ttcaaactgt aaaaaaaaat aaatctctaa gtatgttttg atgagttgct 
005701 ctgtactcat ccagcattat cgactgttca agaacagaaa ctctggattt tcttggatgc 
005761 actgtgcctg ctattaacta ttactgcttg acatgctaca tggcagtgca gatgtgccac 
005821 tatttgttga ccataaatat gtaccgtctg ctagacattg gttgcatgtg aactgtgtgt 
005881 agtatagaca gcattctaac tgcatgctta caataggatc aaacagcttg gctataagtt 
005941 cacagaattc atacccatta ataatataac ttgtctgaat gattgcagga aacctgttaa 
006001 aaaggtgggg tctttctgtt ggctttccct agctatttgc attttggagc ttctactatg 
006061 catcaagttt ggacatggtg agtttgatgt aaatttcttg atgcttgcaa gcaacatttg 
006121 catccttaaa attaaccgtt ctgaacacgt tggcttgtga acaggtctct ttccgaagtc 
006181 gatgccgtca tggttgttca tagcctggac gaccgtggcg tcgcttctga tgatgttcct 
006241 tcttgtgtgg acttggaaaa tttaccgaac aatgataagg aaaaggctat gattcttctg 
006301 ttgctttgct ctcaattctt tcctcctcca ttcaatattg tcgtgtaaat attcattcaa 
006361 aaaaatctgt acatgtggta gtagccatta atttggtggt ctcgagaagg atcatcataa 
006421 ggaattttat gtctttgcct ttgtattcca tgagccaaaa tggcattccc ttttccttcc 
006481 tgtgatgtaa ctctgacagc caaactttag tgttcctttg gtccaatcta attcctggga 
006541 aataatgaac caagatttat tct

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ830325 whatlal31h21 484
more... (Total Hit Count: 3 )
/rice/oryzabase