cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK066416     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0656900 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 26438097 -  26442112  ( + ) ;   4016(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 26438097 -  26438483 ( + ) ;   387 (bp)
Exon 2 Location 26438573 -  26438649 ( + ) ;   77 (bp)
Exon 3 Location 26438812 -  26438946 ( + ) ;   135 (bp)
Exon 4 Location 26439643 -  26439697 ( + ) ;   55 (bp)
Exon 5 Location 26439823 -  26439910 ( + ) ;   88 (bp)
Exon 6 Location 26441167 -  26441265 ( + ) ;   99 (bp)
Exon 7 Location 26441354 -  26442112 ( + ) ;   759 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0656900 Os03t0656900-01 J013067A14 201843 J013067A14 1744 LOC_Os03g45400.1 AK066416 5177 AP008209.2 255674134 BAF12725.1 113549282 NC_008396.2 297602023 NM_001057346.1 115454420 NP_001050811.1 115454421


Chromosome: 3 ,  position: 26,438,097 - 26,442,112 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atttctcttt ctcccacctc caccggcgac gccaccgccg ccgcctcctc ctcctccgcc 
000061 tctctacggc agcctcgccg ccgcgccgcg cagcgcagcg cagagcaaca tggaagcgac 
000121 gggcgccgcc gtatccgcct tctccaccgc gtcctcgtcg agtcccgcgg cgcctagaca 
000181 cggccgtctc ctggcgagcc ccgcggcgtg gcgcagcgca cggacgctgc caccacgggc 
000241 cgtcgcctcc tcccgcgcga cggtcctcgt ctcgaaccct cctccgccgc cgctgccgcc 
000301 gacacccgct cctgctgcgg tcgcgccctc caaggtcgac cggtccgggc ggttctgtag 
000361 cccccgcgcc gctcgcgagc tcgcgctgtg agtcctcgcc ctcgagcccg agaactttgg 
000421 gctgcttgat tcggttcgta tttgtcgcta atggctgcct gccaccgtgc ttgcaggatg 
000481 atttcctacg cggcttgcct tgagggcgcc gacgtggtgc ggctcttcga ccgcagaatc 
000541 agcgcgagaa gaggtgagcc tcctcctgac gcctcttagc ttctttgcac tatccttgtg 
000601 atccactagc agcatcactg tgctgcacaa tggcttcaat tgtttggcct tcgttggata 
000661 gatgaatttg gtttctcttt gcctcattct ggtcttgttc tatatgattt tgcagaacct 
000721 ggctatgttt tcgataaggc gtgcgtggtg aactacaacc atatgagctt cggtggggga 
000781 cctctggagg tcgggacaga ggaggaggct gagaagctca tgagtcagaa cgagaaggat 
000841 tcagcaaatg gtaacaactt ttttgcaaat gttattctca ttgaaactag ttctgcatct 
000901 tgctggatga aaattgggga tatagcactg gcacatgatc ttacttaact atttcttcaa 
000961 gagctcatta actaatcggc taatcgcaat gactaatcct gcaagttcaa tcacttgcca 
001021 ttttgcaaga gcaaaagtcc cctagattac cctaatcctg tccttaatac gaagtcaatg 
001081 tcacaatcgc aatgctattg gttttatggc aatgatatta tgcttgcctt ttataaacat 
001141 ttggaatata atatgtgttt ttttgcagta tatttattca ggaaataatg tatccttttt 
001201 tttaaaaaaa aactgtgagt atttttagat aatactccct ccgtcccata atataagaga 
001261 ttttgagttt ttccttgtac tgtttgacca ctcgtcttat tcaaaaaaaa aaatggaatt 
001321 actattttgt ttgacttact ttattatcta aagtacatta agcacaactt ttcgtttttt 
001381 atatttgcac aaattttttg aataagacga gtggtcaaac agtacaagca aaaactcaaa 
001441 atcccttata ttatgggacg gagggagtat gttcacaaca tgtctctgta gtatattctt 
001501 gatgaattat ttaatttgac acaagattca ttgtcttgta attcagaagc agaagttctt 
001561 tcagctcctc caaagctggt gtacaacaac tttgtgttac ggtatttttt tcttctctcc 
001621 tctttttggt tggtataatc acataatgga cactgttgtt taggtaacgt gtttttacgt 
001681 gcggggtcct tgtaggtatt tttctaatta catgctttct gaacagactg gctcgagaaa 
001741 ttttagtggc tgttgccagt ggatgggaca agcatgttga tatcatcaac aaaataactc 
001801 cccagaattg gaaggttgga tacttttttt cccagtgttg tatatcgatc catcaaatct 
001861 ttgtacttgc ttgctaaatc gtgcataagt agaatgcttg ttgatttaat tgaaaggcgc 
001921 tatatattat tagagaacat aatccctcag taatcactag tactgaatta tatatgcatc 
001981 ttgttactat attgtgtaac aatctagttg gagctgcttt tgcctcatca ccgtgctaaa 
002041 ttatcgaaca tttaggaaca gggttatacc tgccatttga tcattcctat gatcaatttc 
002101 tcaagtaaaa cctgcatctt aggagtaggt tacttgccaa ataaaaccat ttgtcacata 
002161 atatttttaa tacatttttt taacctttaa cttacatccc actaaaaaaa agtcaactca 
002221 tggaatttca gactactatg tatagtttcc actttaaaca gctgtcaatg tgatggattg 
002281 ggatgttccc aagccccgaa gcgagtgcac agttggccta ctataatgac caaaaggtgt 
002341 agcaccagag ccccacaact ttgatttatg gggatcaaaa ctgaaagtaa atggtgtgat 
002401 tgagctcaca atgaaactct cagtcacagt aaatgagagt tgattgtatt gattggttgc 
002461 atgtaatgat taatgtttgg gtagtataag tttattatta gcgtagttgt tgtgtagcag 
002521 acaggctgta aatgaatcat taatagagag ggcttagagg ggtgggaaaa gaggatattg 
002581 tagttaagtt tatactaaaa agaagggtat aaaggattcg ttaatagtaa ttaaaagcta 
002641 aacaaaaatt gaggcctcta aatttttcgt gcccgtgcat cttgagcaag ccacatttga 
002701 accatgttag gtgcttgttc accacctttt gctatggctg taggcatccc tcgatgcaaa 
002761 agccaggatt tccctgttat ctttgcattg ctcacctggt tcatttcccc ttctatgggg 
002821 cttgatttcc tacaggcata gttgtcatat agaggtgcta gttatttaat acatcagcta 
002881 ccttcttgaa atatctgaaa ttttccatca atgttagttg attctaccca aagatccctg 
002941 tttttctaaa caaaaatttt aagaatatga aagacaatag gttgcccaat cacatgctta 
003001 attgctgatt taaatgatca tgttttgctt ctatttaatt tttgctgact cgccaaaatt 
003061 ctgtgggcag gacgaacctg ttgcaaggat ccttgaactt tgtattcttc atattgccat 
003121 ggcagagatg acatcaaaag gaacacctca caaaattgtc attaacgagg ttaccatttt 
003181 atcacaatct ccttcatatt ttaagtttga caaaagaaac atataaatat ctatcttgtt 
003241 atgtccattg atgataggct gtggatttgg caaaacggtt ctgtgatggt ggtgctcctc 
003301 gggtaatcaa tggatgcctt cggacatttg tgaaggatca catgaacatt gacaccagtc 
003361 agccagctcc agctgagtca aaagcgtgaa gtttttgcaa atatgaaaat atgaatcatc 
003421 acaaatatga ttcaaagaat agaagcacgg agaaaatcct gctctctttg tctgatctcc 
003481 tttggttgtt taaagattga ttggtgaagt tgaaaggagg caaacatgct ggacttgtgg 
003541 agaactagaa gtatcttcaa tatttagctg gtggttagac tagatatgtt gagccatata 
003601 ctgatgatgc actcttcttg aagaactaaa tgacactact tctaacagct tttgccatgc 
003661 tgattcctgt gcttaatggg acaagagaac ctgtatcata gtgtatgtgt aaagttgcaa 
003721 ggtaagggtt gcatctctca atttcacaat aacgtgcttg agctgctgag taagttggga 
003781 gttgggagtt tgcagctgat actatggaag atgcattttc tccaagattt ggatatgata 
003841 tattgtgtaa ttctacctgc acacgagttc tgttcaaata taaatttggt acacctctaa 
003901 tagtatttgt attgtatatg gctgcaaact tttcctacga aattctttgt aagtagcatg 
003961 ggttgtaacc tgcttaacga tccaatgatt gctgctttaa ttaataagtt tgttgc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AV916615 bags19a12 515
more... (Total Hit Count: 5 )
Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ724342 whvh5b02 598 view details
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