Vol. 21 >B. Research Notes>I. Varietal differentiation and evolution |
1. | Analysis of Somaclonal Variation by Using Landmarkers of Genomic DNA Clones in Rice |
M. YAMADA1, Z. LU1, J. SHIMAZU3,
M. SENDA2, R. ISHIKAWA1, S. AKADA2, T.
HARADA1 and M. NIIZEKI1 1) Laboratory of Plant Breeding and Genetics, Faculty of Agriculture and Life Science, Hirosaki University, Hirosaki, Aomori, 036-8561, Japan 2) Gene Research Center, Hirosaki University, Hirosaki, Aomori, 036-8561, Japan 3) National Institute of Vegetable and Tea Science, Tsukuba, Ibaraki, 305-8666, Japan |
In plants regenerated from cell and tissue cultures, it is well known
that genetic variations occur at high frequency and it is called as somaclonal
variation. Somaclonal variation has been reported in a large number of
plants, including potato, sugarcane, tobacco, wheat, rice and so on. In
addition, it has been found in various agronomic traits such as disease
resistance, plant height, tiller number, maturity, and various physiological
and biochemical traits (Henry et al. 1998). It is also known that
somaclonal variation may involve polyploidy, aneuploidy, abnormal structural
changes of chromosomes, polymorphism of isozymes, reactivity of transposons,
methylation, homologous recombination (Hirochika et al. 1996, Liu
et al. 2004, Miyao et al. 2003). The work on cell and tissue
culture and plant regeneration is indispensable to genetic engineerings
such as somatic cell fusion and transformation. However, the somaclonal
variation gives rise to either a barrier to development or an acceleration
of development of new varieties by genetic engineerings (Karp et al.
1995). Although there are many reports on phenomena of somaclonal variation,
we are still not able to figure out how somaclonal variation occurs. Rice
(Oryza sativa L.) is one of the most extensively studied crops
in the fields of genetics, plant breeding, morphology, physiology, cell
technology and so on. Since the rice plant is a self-pollinating crop,
cultivated rice plants are considered to be homozygous for the most genes.
Therefore, it is possible to find easily somaclonal variation by using
rice plants regenerated from calli. among plants (Fig. 1). Because the deduced size of additional bands were
4.3 kb larger than that of the biggest control bands in Southern blot
analysis digested with Hind III, we estimated that the additional
bands are caused by a retrotransposon of Tos17, the size of which
is 4.3 kb, and that the transposed location of Tos17 may be around
or at inside of G232 locus. Furthermore, Southern blot analysis by using
Tos17 as a probe proved that the additional bands are caused indeed
by Tos17. In order to determine accurate locations of Tos17
in the additional bands, we amplified the DNA and sequenced around and
the inside of G232 locus. As a result, it was clarified that in three
plants Tos17 transposed into different region around G232 or at
inside of G232 locus (Fig. 2). This result may provide a full account
of different polymorphic patterns among plants in Southern blot analysis
by using DNAs digested with BamH I (Fig. 1). Tos17 has a
BamH I site at 2.3 kb from the 5' end but not any HindIII
site. In the case of Mu-247 plant, Tos17 transposed into the edge
of G232 locus. Thus, we could not probably detect a small additional band.
In the case of Tu-107 plant, Tos17 transposed into the middle of
G232 locus and we could detect two additional bands. In the Tu-143 plant,
Tos17 transposed at outside of G232 locus and there was no additional
band.
somaclonal variation. Transpositional sites of Tos17 were different
in three polymorphic plants, but they located mutually at quite near region.
Therefore, it is considered that there is a hot spot for transposition
of Tos17 around and at inside of G232 locus. However, in this study
we could not find any features of hot spot so far. |
Vol. 21 >B. Research Notes>I. Varietal differentiation and evolution |