HdrR-II1

Strain information
Strain ID IB178
Strain Name HdrR-II1
Strain Type Inbred strains
Characteristics This strain belongs to the Southern Japanese Population, and derived from the stock of d-rR strain, Nagoya University (Yamamoto, 1953, 1975). The body color of this fish is white in females (bb, X^rX^r) and orange-red in males (bb, X^rY^R).
Notes Strain for genome sequencing
Journal
  •    49  Hits.
    • Sakamoto T, Yoshiki M, Takahashi H, Yoshida M, Ogino Y, Ikeuchi T, Nakamachi T, Konno N, Matsuda K, Sakamoto H. Principal function of mineralocorticoid signaling suggested by constitutive knockout of the mineralocorticoid receptor in medaka fish. Sci Rep 2016/11/29.6.37991.

      Horie Y, Myosho T, Sato T, Sakaizumi M, Hamaguchi S, Kobayashi T. Androgen induces gonadal soma-derived factor, Gsdf, in XX gonads correlated to sex-reversal but not Dmrt1 directly, in the teleost fish, northern medaka (Oryzias sakaizumii). Mol. Cell. Endocrinol. 2016/11/15.436.141-9.

      Kowalska A, Siwicki AK, Kowalski RK. Dietary resveratrol improves immunity but reduces reproduction of broodstock medaka Oryzias latipes (Temminck & Schlegel). Fish Physiol. Biochem. 2016/07/20.43(1).27-37.

      Zhang X, Guan G, Li M, Zhu F, Liu Q, Naruse K, Herpin A, Nagahama Y, Li J, Hong Y. Autosomal gsdf acts as a male sex initiator in the fish medaka. Sci Rep 2016/01/27.6.19738.

      Imai T, Saino K, Matsuda M. Mutation of Gonadal soma-derived factor induces medaka XY gonads to undergo ovarian development. Biochem. Biophys. Res. Commun. 2015/11/06.467(1).109-14.

      Yuasa HJ, Mizuno K, Ball HJ. Low efficiency IDO2 enzymes are conserved in lower vertebrates, whereas higher efficiency IDO1 enzymes are dispensable. FEBS J. 2015/07.282(14).2735-45.

      Guan G, Zhang X, Naruse K, Nagahama Y, Hong Y. Gene replacement by zinc finger nucleases in medaka embryos. Mar. Biotechnol. 2014/12.16(6).739-47.

      Tsuboko S, Kimura T, Shinya M, Suehiro Y, Okuyama T, Shimada A, Takeda H, Naruse K, Kubo T, Takeuchi H. Genetic control of startle behavior in medaka fish. PLoS ONE 2014/11/13.9(11).e112527.

      Horie Y, Kobayashi T. Relationships between gonadal and gonadotrophic differentiation during early gonadal sex differentiation in several strains from the Southern population of Japanese medaka (Oryzias latipes). J Exp Zool A Ecol Genet Physiol 2014/10.321(8).472-7.

      Nishimura T, Herpin A, Kimura T, Hara I, Kawasaki T, Nakamura S, Yamamoto Y, Saito TL, Yoshimura J, Morishita S, Tsukahara T, Kobayashi S, Naruse K, Shigenobu S, Sakai N, Schartl M, Tanaka M. Analysis of a novel gene, Sdgc, reveals sex chromosome-dependent differences of medaka germ cells prior to gonad formation. Development 2014/09.141(17).3363-9.

      Spivakov M, Auer TO, Peravali R, Dunham I, Dolle D, Fujiyama A, Toyoda A, Aizu T, Minakuchi Y, Loosli F, Naruse K, Birney E, Wittbrodt J. Genomic and phenotypic characterization of a wild medaka population: towards the establishment of an isogenic population genetic resource in fish. G3 (Bethesda) 2014/03.4(3).433-45.

      Ng GH, Gong Z. GFP transgenic medaka (Oryzias latipes) under the inducible cyp1a promoter provide a sensitive and convenient biological indicator for the presence of TCDD and other persistent organic chemicals. PLoS ONE 2013/05.8(5).e64334.

      Shiozaki K, Takeshita K, Ikeda M, Ikeda A, Harasaki Y, Komatsu M, Yamada S, Yamaguchi K, Miyagi T. Molecular cloning and biochemical characterization of two novel Neu3 sialidases, neu3a and neu3b, from medaka (Oryzias latipes). Biochimie 2013/02.95(2).280-9.

      Zhao H, Guan G, Duan J, Cheng N, Wang J, Matsuda M, Paul-Prasanth B, Nagahama Y. Ol4E-T, a eukaryotic translation initiation factor 4E-binding protein of medaka fish (Oryzias latipes), can interact with nanos3 and vasa in vitro. J. Exp. Zool. B Mol. Dev. Evol. 2013/01.320(1).10-21.

      Kimura T, Shinya M, Naruse K. Genetic analysis of vertebral regionalization and number in medaka (Oryzias latipes) inbred lines. G3 (Bethesda) 2012/11.2(11).1317-23.

      Kawasaki T, Kurauchi K, Higashihata A, Deguchi T, Ishikawa Y, Yamauchi M, Sasanuma M, Hori H, Tsutsumi M, Wakamatsu Y, Yuba S, Kinoshita M. Transgenic medaka fish which mimic the endogenous expression of neuronal kinesin, KIF5A. Brain Res. 2012/10/22.1480.12-21.

      PMID: 0 [ RRC reference ]
      LI Jian-Zhong, LIU Qiong, WANG De-Shou, ZHOULin-Yan, SAKAI Fumie, NAGAHAMA Yoshitaka Molecular cloning and identification of two WNT4 genes from the medaka (Oryzias latipes). Acta Hydrobiologica Sinica (China) 2012/07/15...

      Nakamoto M, Fukasawa M, Tanaka S, Shimamori K, Suzuki A, Matsuda M, Kobayashi T, Nagahama Y, Shibata N. Expression of 3β-hydroxysteroid dehydrogenase (hsd3b), star and ad4bp/sf-1 during gonadal development in medaka (Oryzias latipes). Gen. Comp. Endocrinol. 2012/04/01.176(2).222-30.

      Murata Y, Oda S, Mitani H. Allelic expression changes in Medaka (Oryzias latipes) hybrids between inbred strains derived from genetically distant populations. PLoS ONE 2012.7(5).e36875.

      Yasuda T, Oda S, Li Z, Kimori Y, Kamei Y, Ishikawa T, Todo T, Mitani H. Gamma-ray irradiation promotes premature meiosis of spontaneously differentiating testis-ova in the testis of p53-deficient medaka (Oryzias latipes). Cell Death Dis 2012.3.e395.

      Zhao H, Cui J, Wang Y, Liu X, Zhao D, Duan J. Spatial-temporal expression of pum1 and pum2 in medaka Oryzias latipes. J. Fish Biol. 2012/01.80(1).100-9.

      Boon Ng GH, Gong Z. Maize Ac/Ds transposon system leads to highly efficient germline transmission of transgenes in medaka (Oryzias latipes). Biochimie 2011/10.93(10).1858-64.

      Miura F, Tsukamoto K, Mehta RB, Naruse K, Magtoon W, Nonaka M. Transspecies dimorphic allelic lineages of the proteasome subunit beta-type 8 gene (PSMB8) in the teleost genus Oryzias. Proc. Natl. Acad. Sci. U.S.A. 2010/12/14.107(50).21599-604.

      Shibata Y, Paul-Prasanth B, Suzuki A, Usami T, Nakamoto M, Matsuda M, Nagahama Y. Expression of gonadal soma derived factor (GSDF) is spatially and temporally correlated with early testicular differentiation in medaka. Gene Expr. Patterns 2010/09.10(6).283-9.

      Kimura T, Naruse K. M-marker 2009, a marker set for mapping medaka mutants using PCR length polymorphisms with an automated microchip gel electrophoresis system. BioTechniques 2010/08.49(2).582-3.

      Hirayama M, Mukai T, Miya M, Murata Y, Sekiya Y, Yamashita T, Nishida M, Watabe S, Oda S, Mitani H. Intraspecific variation in the mitochondrial genome among local populations of Medaka Oryzias latipes. Gene 2010/06/01.457(1-2).13-24.

      Kato M, Takehana Y, Sakaizumi M, Hamaguchi S. A sex-determining region on the Y chromosome controls the sex-reversal ratio in interspecific hybrids between Oryzias curvinotus females and Oryzias latipes males. Heredity (Edinb) 2010/02.104(2).191-5.

      Ishikawa T, Kamei Y, Otozai S, Kim J, Sato A, Kuwahara Y, Tanaka M, Deguchi T, Inohara H, Tsujimura T, Todo T. High-resolution melting curve analysis for rapid detection of mutations in a Medaka TILLING library. BMC Mol. Biol. 2010.11.70.

      Takeda H, Shimada A. The art of medaka genetics and genomics: what makes them so unique? Annu. Rev. Genet. 2010.44.217-41.

      Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K. Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development. Gene 2010/01/01.449(1-2).41-9.

      Katsumura T, Oda S, Mano S, Suguro N, Watanabe K, Mitani H, Oota H, Kawamura S. Genetic differentiation among local populations of medaka fish (Oryzias latipes) evaluated through grid- and deme-based sampling. Gene 2009/08/15.443(1-2).170-7.

      Anzai D, Tonoyama Y, Ikeda A, Kawasaki T, Oka S. Regulated expression of the HNK-1 carbohydrate is essential for medaka (Oryzias latipes) embryogenesis. Glycobiology 2009/08.19(8).868-78.

      Deguchi T, Fujimori KE, Kawasaki T, Xianghai L, Yuba S. Expression patterns of the Egr1 and Egr3 genes during medaka embryonic development. Gene Expr. Patterns 2009/04.9(4).209-14.

      Sasaki S, Mello CC, Shimada A, Nakatani Y, Hashimoto S, Ogawa M, Matsushima K, Gu SG, Kasahara M, Ahsan B, Sasaki A, Saito T, Suzuki Y, Sugano S, Kohara Y, Takeda H, Fire A, Morishita S. Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science 2009/01/16.323(5912).401-4.

      Itou J, Suyama M, Imamura Y, Deguchi T, Fujimori K, Yuba S, Kawarabayasi Y, Kawasaki T. Functional and comparative genomics analyses of pmp22 in medaka fish. BMC Neurosci 2009.10.60.

      Takeda H. Draft genome of the medaka fish: a comprehensive resource for medaka developmental genetics and vertebrate evolutionary biology. Dev. Growth Differ. 2008/06.50 Suppl 1.S157-66.

      Ahsan B, Kobayashi D, Yamada T, Kasahara M, Sasaki S, Saito TL, Nagayasu Y, Doi K, Nakatani Y, Qu W, Jindo T, Shimada A, Naruse K, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto S, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Kohara Y, Morishita S. UTGB/medaka: genomic resource database for medaka biology. Nucleic Acids Res. 2008/01.36(Database issue).D747-52.

      Kimura T, Shimada A, Sakai N, Mitani H, Naruse K, Takeda H, Inoko H, Tamiya G, Shinya M. Genetic analysis of craniofacial traits in the medaka. Genetics 2007/12.177(4).2379-88.

      Tanaka K, Takehana Y, Naruse K, Hamaguchi S, Sakaizumi M. Evidence for different origins of sex chromosomes in closely related Oryzias fishes: substitution of the master sex-determining gene. Genetics 2007/12.177(4).2075-81.

      Inohaya K, Takano Y, Kudo A. The teleost intervertebral region acts as a growth center of the centrum: in vivo visualization of osteoblasts and their progenitors in transgenic fish. Dev. Dyn. 2007/11.236(11).3031-46.

      Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K, Kasai Y, Jindo T, Kobayashi D, Shimada A, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto S, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Morishita S, Kohara Y. The medaka draft genome and insights into vertebrate genome evolution. Nature 2007/06/07.447(7145).714-9.

      Matsuda M, Shinomiya A, Kinoshita M, Suzuki A, Kobayashi T, Paul-Prasanth B, Lau EL, Hamaguchi S, Sakaizumi M, Nagahama Y. DMY gene induces male development in genetically female (XX) medaka fish. Proc. Natl. Acad. Sci. U.S.A. 2007/03/06.104(10).3865-70.

      Takehana Y, Demiyah D, Naruse K, Hamaguchi S, Sakaizumi M. Evolution of different Y chromosomes in two medaka species, Oryzias dancena and O. latipes. Genetics 2007/03.175(3).1335-40.

      Koga A, Iida A, Hori H, Shimada A, Shima A. Vertebrate DNA transposon as a natural mutator: the medaka fish Tol2 element contributes to genetic variation without recognizable traces. Mol. Biol. Evol. 2006/07.23(7).1414-9.

      Suzuki A, Nakamoto M, Kato Y, Shibata N. Effects of estradiol-17beta on germ cell proliferation and DMY expression during early sexual differentiation of the medaka Oryzias latipes. Zool. Sci. 2005/07.22(7).791-6.

      Fukamachi S, Asakawa S, Wakamatsu Y, Shimizu N, Mitani H, Shima A. Conserved function of medaka pink-eyed dilution in melanin synthesis and its divergent transcriptional regulation in gonads among vertebrates. Genetics 2004/11.168(3).1519-27.

      Takehana Y, Nagai N, Matsuda M, Tsuchiya K, Sakaizumi M. Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zool. Sci. 2003/10.20(10).1279-91.

      Shinomiya A, Shibata N, Sakaizumi M, Hamaguchi S. Sex reversal of genetic females (XX) induced by the transplantation of XY somatic cells in the medaka, Oryzias latipes. Int. J. Dev. Biol. 2002/08.46(5).711-7.

      Fukamachi S, Shimada A, Shima A. Mutations in the gene encoding B, a novel transporter protein, reduce melanin content in medaka. Nat. Genet. 2001/08.28(4).381-5.
Reference
Category Inbred strains
Organization National Institute for Basic Biology
Live in NIBB
Deposited by National Institute of Radiological Sciences
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