HNI-II

Strain information
Strain ID IB176
Strain Name HNI-II
Strain Type Inbred strains
Characteristics This strain belongs to the Northern Japanese Population, and derived from the wild population in Niigata. The body of this fish is black and elongate shape.
Notes Strain for genome sequencing
Journal
  •    33  Hits.
    • Horie Y, Myosho T, Sato T, Sakaizumi M, Hamaguchi S, Kobayashi T. Androgen induces gonadal soma-derived factor, Gsdf, in XX gonads correlated to sex-reversal but not Dmrt1 directly, in the teleost fish, northern medaka (Oryzias sakaizumii). Mol. Cell. Endocrinol. 2016/11/15.436.141-9.

      Nagashima H, Sugahara F, Watanabe K, Shibata M, Chiba A, Sato N. Developmental origin of the clavicle, and its implications for the evolution of the neck and the paired appendages in vertebrates. J. Anat. 2016/06/10.229(4).536-48.

      Utagawa U, Higashi S, Kamei Y, Fukamachi S. Characterization of assortative mating in medaka: Mate discrimination cues and factors that bias sexual preference. Horm Behav 2016/05/31...

      Tsuboko S, Kimura T, Shinya M, Suehiro Y, Okuyama T, Shimada A, Takeda H, Naruse K, Kubo T, Takeuchi H. Genetic control of startle behavior in medaka fish. PLoS ONE 2014/11/13.9(11).e112527.

      Spivakov M, Auer TO, Peravali R, Dunham I, Dolle D, Fujiyama A, Toyoda A, Aizu T, Minakuchi Y, Loosli F, Naruse K, Birney E, Wittbrodt J. Genomic and phenotypic characterization of a wild medaka population: towards the establishment of an isogenic population genetic resource in fish. G3 (Bethesda) 2014/03.4(3).433-45.

      Murata Y, Oda S, Mitani H. Allelic expression changes in Medaka (Oryzias latipes) hybrids between inbred strains derived from genetically distant populations. PLoS ONE 2012.7(5).e36875.

      Miura F, Tsukamoto K, Mehta RB, Naruse K, Magtoon W, Nonaka M. Transspecies dimorphic allelic lineages of the proteasome subunit beta-type 8 gene (PSMB8) in the teleost genus Oryzias. Proc. Natl. Acad. Sci. U.S.A. 2010/12/14.107(50).21599-604.

      Kobayashi D, Iijima N, Hagiwara H, Kamura K, Takeda H, Yokoyama T. Characterization of the medaka (Oryzias latipes) primary ciliary dyskinesia mutant, jaodori: Redundant and distinct roles of dynein axonemal intermediate chain 2 (dnai2) in motile cilia. Dev. Biol. 2010/11/01.347(1).62-70.

      Hirayama M, Mukai T, Miya M, Murata Y, Sekiya Y, Yamashita T, Nishida M, Watabe S, Oda S, Mitani H. Intraspecific variation in the mitochondrial genome among local populations of Medaka Oryzias latipes. Gene 2010/06/01.457(1-2).13-24.

      Inohaya K, Takano Y, Kudo A. Production of Wnt4b by floor plate cells is essential for the segmental patterning of the vertebral column in medaka. Development 2010/06.137(11).1807-13.

      Kato M, Takehana Y, Sakaizumi M, Hamaguchi S. A sex-determining region on the Y chromosome controls the sex-reversal ratio in interspecific hybrids between Oryzias curvinotus females and Oryzias latipes males. Heredity (Edinb) 2010/02.104(2).191-5.

      Takeda H, Shimada A. The art of medaka genetics and genomics: what makes them so unique? Annu. Rev. Genet. 2010.44.217-41.

      Fukamachi S, Kinoshita M, Aizawa K, Oda S, Meyer A, Mitani H. Dual control by a single gene of secondary sexual characters and mating preferences in medaka. BMC Biol. 2009/09/29.7.64.

      Deguchi T, Fujimori KE, Kawasaki T, Ohgushi H, Yuba S. Molecular cloning and gene expression of the prox1a and prox1b genes in the medaka, Oryzias latipes. Gene Expr. Patterns 2009/06.9(5).341-7.

      Hibiya K, Katsumoto T, Kondo T, Kitabayashi I, Kudo A. Brpf1, a subunit of the MOZ histone acetyl transferase complex, maintains expression of anterior and posterior Hox genes for proper patterning of craniofacial and caudal skeletons. Dev. Biol. 2009/05/15.329(2).176-90.

      Sasaki S, Mello CC, Shimada A, Nakatani Y, Hashimoto S, Ogawa M, Matsushima K, Gu SG, Kasahara M, Ahsan B, Sasaki A, Saito T, Suzuki Y, Sugano S, Kohara Y, Takeda H, Fire A, Morishita S. Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science 2009/01/16.323(5912).401-4.

      Hashimoto H, Miyamoto R, Watanabe N, Shiba D, Ozato K, Inoue C, Kubo Y, Koga A, Jindo T, Narita T, Naruse K, Ohishi K, Nogata K, Shin-I T, Asakawa S, Shimizu N, Miyamoto T, Mochizuki T, Yokoyama T, Hori H, Takeda H, Kohara Y, Wakamatsu Y. Polycystic kidney disease in the medaka (Oryzias latipes) pc mutant caused by a mutation in the Gli-Similar3 (glis3) gene. PLoS ONE 2009.4(7).e6299.

      Fujimori KE, Kawasaki T, Deguchi T, Yuba S. Characterization of a nervous system-specific promoter for growth-associated protein 43 gene in Medaka (Oryzias latipes). Brain Res. 2008/12/15.1245.1-15.

      Takeda H. Draft genome of the medaka fish: a comprehensive resource for medaka developmental genetics and vertebrate evolutionary biology. Dev. Growth Differ. 2008/06.50 Suppl 1.S157-66.

      Ahsan B, Kobayashi D, Yamada T, Kasahara M, Sasaki S, Saito TL, Nagayasu Y, Doi K, Nakatani Y, Qu W, Jindo T, Shimada A, Naruse K, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto S, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Kohara Y, Morishita S. UTGB/medaka: genomic resource database for medaka biology. Nucleic Acids Res. 2008/01.36(Database issue).D747-52.

      Kimura T, Shimada A, Sakai N, Mitani H, Naruse K, Takeda H, Inoko H, Tamiya G, Shinya M. Genetic analysis of craniofacial traits in the medaka. Genetics 2007/12.177(4).2379-88.

      Tanaka K, Takehana Y, Naruse K, Hamaguchi S, Sakaizumi M. Evidence for different origins of sex chromosomes in closely related Oryzias fishes: substitution of the master sex-determining gene. Genetics 2007/12.177(4).2075-81.

      Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K, Kasai Y, Jindo T, Kobayashi D, Shimada A, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto S, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Morishita S, Kohara Y. The medaka draft genome and insights into vertebrate genome evolution. Nature 2007/06/07.447(7145).714-9.

      Yokoi H, Shimada A, Carl M, Takashima S, Kobayashi D, Narita T, Jindo T, Kimura T, Kitagawa T, Kage T, Sawada A, Naruse K, Asakawa S, Shimizu N, Mitani H, Shima A, Tsutsumi M, Hori H, Wittbrodt J, Saga Y, Ishikawa Y, Araki K, Takeda H. Mutant analyses reveal different functions of fgfr1 in medaka and zebrafish despite conserved ligand-receptor relationships. Dev. Biol. 2007/04/01.304(1).326-37.

      Matsuda M, Shinomiya A, Kinoshita M, Suzuki A, Kobayashi T, Paul-Prasanth B, Lau EL, Hamaguchi S, Sakaizumi M, Nagahama Y. DMY gene induces male development in genetically female (XX) medaka fish. Proc. Natl. Acad. Sci. U.S.A. 2007/03/06.104(10).3865-70.

      Fukamachi S, Sugimoto M, Mitani H, Shima A. Somatolactin selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells in medaka. Proc. Natl. Acad. Sci. U.S.A. 2004/07/20.101(29).10661-6.

      Takehana Y, Nagai N, Matsuda M, Tsuchiya K, Sakaizumi M. Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zoolog Sci. 2003/10.20(10).1279-91.

      Kuwahara Y, Shimada A, Mitani H, Shima A. Gamma-ray exposure accelerates spermatogenesis of medaka fish, Oryzias latipes. Mol. Reprod. Dev. 2003/06.65(2).204-11.

      Aizawa K, Shimada A, Naruse K, Mitani H, Shima A. The medaka midblastula transition as revealed by the expression of the paternal genome. Gene Expr. Patterns 2003/03.3(1).43-7.

      Kanamori A, Naruse K, Mitani H, Shima A, Hori H. Genomic organization of ZP domain containing egg envelope genes in medaka (Oryzias latipes). Gene 2003/02/13.305(1).35-45.

      Kondo M, Froschauer A, Kitano A, Nanda I, Hornung U, Volff JN, Asakawa S, Mitani H, Naruse K, Tanaka M, Schmid M, Shimizu N, Schartl M, Shima A. Molecular cloning and characterization of DMRT genes from the medaka Oryzias latipes and the platyfish Xiphophorus maculatus. Gene 2002/08/07.295(2).213-22.

      Shinomiya A, Shibata N, Sakaizumi M, Hamaguchi S. Sex reversal of genetic females (XX) induced by the transplantation of XY somatic cells in the medaka, Oryzias latipes. Int. J. Dev. Biol. 2002/08.46(5).711-7.

      Fukamachi S, Shimada A, Shima A. Mutations in the gene encoding B, a novel transporter protein, reduce melanin content in medaka. Nat. Genet. 2001/08.28(4).381-5.
Category Inbred strains
Organization National Institute for Basic Biology
Live in NIBB
Deposited by National Institute of Radiological Sciences
Order Request


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