NBRP Medaka

Medaka Strain
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	Introduction to Medaka (NBRP Online Forum 2020)

Home > cDNA/BAC/Fosmid search > cDNA cluster detail

CLSTR00039 VD

Merge cluster information
Name	CLSTR00039
Library	ALL	299	cDNA [Download: FASTA]
	olea	39	cDNA [Download: FASTA] rolea10k22 rolea11g10 rolea12d08 rolea15j21 rolea17g13 rolea23g06 rolea24e16 rolea27e01 rolea28g20 rolea28o02 rolea2e06 rolea30i08 rolea30o03 rolea31i06 rolea33m24 rolea37m01 rolea38p14 rolea40k04 rolea41i09 rolea45p04 rolea46h16 rolea49h16 rolea4j20 rolea50a03 rolea51h19 rolea52o01 rolea53p04 rolea55k10 rolea55l24 rolea56c21 rolea57d17 rolea5d15 rolea5l03 rolea60j07 rolea62p04 rolea6m02 rolea6m21 rolea7o10 rolea9c20
	oleb	9	cDNA [Download: FASTA] roleb11e21 roleb18n18 roleb22a12 roleb37g12 roleb42e10 roleb45c04 roleb45h04 roleb54b16 roleb63b08
	olec	53	cDNA [Download: FASTA] rolec10l06 rolec11m22 rolec17e14 rolec18g24 rolec19b12 rolec19i01 rolec1e06 rolec21b24 rolec22o20 rolec24o07 rolec26b02 rolec27e02 rolec27f24 rolec28l07 rolec29g10 rolec2a02 rolec2c10 rolec31i11 rolec32f24 rolec32k23 rolec34i22 rolec35i05 rolec37l14 rolec39k01 rolec3b18 rolec3m04 rolec40e04 rolec40f06 rolec41i12 rolec41n18 rolec43l23 rolec44g18 rolec45c22 rolec48m22 rolec4j10 rolec4n04 rolec4o04 rolec50m19 rolec51e20 rolec55g18 rolec56f02 rolec56j24 rolec57a20 rolec57e10 rolec57i24 rolec58k24 rolec5b06 rolec5b10 rolec5g12 rolec63j12 rolec65j07 rolec6g02 rolec6l24
	olvl	20	cDNA [Download: FASTA] rolvl10n18 rolvl13i05 rolvl19p23 rolvl1d06 rolvl22a18 rolvl24g23 rolvl25o11 rolvl2l22 rolvl32b16 rolvl32h13 rolvl37j19 rolvl39l23 rolvl40m21 rolvl42e10 rolvl43e02 rolvl53k08 rolvl56o11 rolvl58c04 rolvl59n17 rolvl65n06
	olli	149	cDNA [Download: FASTA] rolli10m05 rolli11g17 rolli12e23 rolli13f20 rolli13m08 rolli14d17 rolli14f13 rolli15h18 rolli15i18 rolli15n17 rolli16g11 rolli16k21 rolli17c01 rolli18p18 rolli19f16 rolli19m02 rolli1e01 rolli1e21 rolli1j12 rolli20a12 rolli20c01 rolli21a06 rolli21c13 rolli21f02 rolli21f13 rolli21g13 rolli21l21 rolli22e14 rolli22f06 rolli22m09 rolli22p04 rolli22p14 rolli23e09 rolli23g11 rolli23n16 rolli24f03 rolli24g11 rolli24i13 rolli24k10 rolli25b09 rolli25k02 rolli25m13 rolli25p07 rolli26d22 rolli27c16 rolli28h07 rolli29f01 rolli2d23 rolli2m05 rolli2m19 rolli2n23 rolli30m23 rolli31h17 rolli32h23 rolli32m09 rolli34e01 rolli34j06 rolli34j23 rolli35b11 rolli35f02 rolli35n16 rolli35n19 rolli36e15 rolli36f23 rolli36l24 rolli36p23 rolli37j01 rolli37k15 rolli37n22 rolli38k12 rolli38m05 rolli38m13 rolli39a21 rolli39a23 rolli39p03 rolli3i21 rolli40l11 rolli41a06 rolli41j11 rolli41l02 rolli41p09 rolli42a21 rolli42d16 rolli42l09 rolli42o10 rolli43a08 rolli44n18 rolli44n19 rolli45c03 rolli46b19 rolli46c19 rolli46n22 rolli47b19 rolli47l18 rolli48c06 rolli48d15 rolli49a21 rolli49f06 rolli49m09 rolli4a19 rolli4p13 rolli50d01 rolli50f20 rolli51b14 rolli51b17 rolli51i04 rolli51l06 rolli51m10 rolli51p16 rolli52l01 rolli52l23 rolli52m03 rolli52m06 rolli52m11 rolli53f10 rolli53o03 rolli54c13 rolli54g19 rolli54j19 rolli54p05 rolli55f13 rolli56j23 rolli56k02 rolli58a24 rolli58c16 rolli58e18 rolli58f03 rolli58o23 rolli58p22 rolli59c07 rolli59d19 rolli59j17 rolli5j09 rolli60d02 rolli60e07 rolli60o11 rolli61g20 rolli62m11 rolli62o04 rolli63e06 rolli63i20 rolli65f21 rolli65l20 rolli65l23 rolli65n24 rolli6p24 rolli8e10 rolli8j14 rolli9f13
	olbr	28	cDNA [Download: FASTA] rolbr10k09 rolbr16a16 rolbr16a24 rolbr19j19 rolbr1e04 rolbr1m08 rolbr20o07 rolbr23g16 rolbr26a01 rolbr32a02 rolbr33k01 rolbr36d07 rolbr36n09 rolbr41a04 rolbr41b22 rolbr41e08 rolbr44i20 rolbr48m22 rolbr50b21 rolbr50o21 rolbr54h09 rolbr54o22 rolbr54p12 rolbr56g18 rolbr57i16 rolbr59f16 rolbr5f01 rolbr9g24
	olgi	1	cDNA [Download: FASTA] rolgi17g07
	olki	0 cDNA
	olsp	0 cDNA
	olte	0 cDNA
	olova	0 cDNA

Before using Assemble Viewer, please ensure that you have the latest version of Java. If you are not using the latest Java version, please download it here. http://java.com/ja/download/

Contig information - 1
Name	Contig1
Clone count	1 clones
Length	875
Assemble Result	Assemble Viewer
Homology(BLAST)
Top Hit	retinol-binding protein-like protein [Xiphophorus hellerii]
Score	687
Evalue	1.95396e-77
Detail
Sequence	[Download: FASTA] >Contig1 GGTTTACAACATTTATTTCTGAAACATGACTACTAAATATACATGCCTTGGCCTAAGACACATAT AGGAATGTTTATCAACAATGTTTGTGCTACAATATGCTGCAAAAGATTGTATTTCCCACGTTAGC TGAGCGAGATTTCAAAAATGTGGGATTTTTCTGTGAAATGAAGGATCTTTCCTCCAAATGGAAGG CTACTCCTACATGACGGAAAATAAATGCTTTAAGAAGATGGGAGGACGTGAAAGTGAGAATATGA ATGAGAATTTACACATTTCTACAAAAAAAACTAAGTCTTTACTCTCTTGTAAGGCTGCAAGCGAG AGGAAACTAGCAGATTGGAACAAAGTCCATGAGGATCTAGAAGAAGGGGATCACTGTTGACTCAA GTCGGCTGTGTTATCGCAGAAACCGTTGTGTGCCACGCGTCTGTATTTGCCCAGCAGGCAAATAT CGTTCTTCTTCTGCGTGATGATGGCCTGGTCCTCTGCCCTCAGGCCCGTTGGGTGACGAGAAAAC ACGAAGGAGTAGCTGTCCAGGCAGGTGCCATCCGAGTCCAGAAGCCTGCAGGAGTAGTGGATGGC GTAGTTGTCGTAGTCGGTGTCAATAACCCAATGTTCGTCATTTCCTGTCTGCAGGTAGGATGCGG CGCCCCAATATTTCATCCTGAACTTGGCAGGTTCAGGGGTGTCCTCAAAGGTGGCGAACATGTGG GCACACATTTCCCAGTTGTTGAGGATGATGACCCTGCCATCGTCCTCCACTTTGAACTCGGCCAC CACATTGTCGAGCAAGAACAAGCCCTCGGGGTCCTTCTTCCTACAGCGTACCACACACCTGCATA CCTGGTCCTATCAAAGTCCTGCTTGACTTG

Contig information - 2
Name	Contig2
Clone count	274 clones
Length	976
Assemble Result	Assemble Viewer
Homology(BLAST)
Top Hit	retinol-binding protein-like protein [Xiphophorus hellerii]
Score	694
Evalue	5.85591e-71
Detail
Sequence	[Download: FASTA] >Contig2 CACAAAAGGTTTACAACATTTTATTTCTGAAACATGACTACTAAATATACATGGCCTTGGGCCTA AGACACATATAGGAATGTTTATCAACAATGTTTGTGCTACAATATGCTGCAAAAGATTGTATTTC CCACGCTTAGCTGAGCGAGATTTCAAAAATGTGGGATTTTTCTGTGAAATGAAGGATCTTTCCTC CAAATGGAAGGCTACTCCTACATGACGGAAAATAAATGCTTTAAGAAGATGGGAGGACGTGAAAG TGAGAATATGAATGAGAATTTACACATTTCTACAAAAAAAAACTAAGTCTTTACTCTCTTGTAAG GCTGCAAGCGAGAGGAAACTAGCAGATTGGAACAAAGTCCATGAGGATCTAGAAGAAGGGGATCA CTGTTGACTCAAGTCGGCTGTGTTATCGCAGAAACCGTTGTGTGCCACGCGTCTGTATTTGCCCA GCAGGCAAATATCGTTCTTCTTCTGCGTGATGATGGCCTGGTCCTCTGCCCTCAGGCCCGTTGGG TGACGAGAAAACACGAAGGAGTAGCTGTCCAGGCAGGTGCCATCCGAGTCCAGAAGCCTGCAGGA GTAGTGGATGGCGTAGTTGTCGTAGTCGGTGTCAATAACCCAATGTTCGTCATTTCCTGTCTGCA GGTAGGATGCGGCGCCCCAATATTTCATCCTGAACTTGGCAGGTTCAGGGGTGTCCTCAAAGGTG GCGAACATGTGGGCACACATTTCCCAGTTGTTGAGGATGATGACCCTGCCCCTTTGCGGTGGCGG TCATCCTGCCCATCGTCCTCCACTTTGAACTCGGCCCACCACATTGTCGAGCAAGAACAAGCCCC TCGGGGGTCCCTTCTTCCCTACAGCGTACCACACACCCTGCATACCCTGGGTCCTATCCAAAGTC CTGCTTGACTTGGAAAATTGGCCGATCTGGCAGTTGTTCTCCCAAGGGTTCGAGCTCGGTGGAGA A

/medaka