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Medaka Tools

Medaka Strain
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Related documents

Biological experiments for elementary, junior high and high school students (Japanese)
Medaka experiments that anyone can do (Japanese)
Life of my teacher Tatsuo AIDA (Japanese)

Featured Link

From spawning to hatching of medaka ~nibb×niconico 
A checklist of the parasites of medaka 
medaka SNP(Beta)
Official Endocrine Disruption Website
M-marker 2009
Ensembl Medaka
M-Base
NBRP Medaka Genome Project
MEPD
Genomicus - Synteny browser -
ZFIN
ZIRC
UTGB Medaka
UCSC In-Silico PCR
The Fish Biology Journal of Medaka (Vol.1 - Vol.3)
The Fish Biology Journal of Medaka (Vol.4 - Vol.11)
Introduction to Medaka (NBRP Online Forum 2020)

CLSTF00036     VD

Merge cluster information
Name CLSTF00036
Library ALL 437 cDNA [Download: FASTA]
olea 0 cDNA
oleb 1 cDNA [Download: FASTA]
oleb23i11 
olec 0 cDNA
olvl 6 cDNA [Download: FASTA]
olvl13g06  olvl1d01  olvl43o05  olvl50h12  olvl56f14  olvl63m24 
olli 10 cDNA [Download: FASTA]
olli11l22  olli16f02  olli21g14  olli47m22  olli49n18  olli50m08  olli62b19  olli63g02  olli65k01  olli8k13 
olbr 6 cDNA [Download: FASTA]
olbr18i11  olbr1e18  olbr26g02  olbr47i17  olbr50b16  olbr63l13 
olgi 160 cDNA [Download: FASTA]
olgi10c01  olgi10c22  olgi10l19  olgi11d08  olgi11f04  olgi11i04  olgi11j02  olgi11j10  olgi12a06  olgi12k16  olgi12o13  olgi13e19  olgi13h19  olgi13n05  olgi14d03  olgi14j01  olgi14l03  olgi14l19  olgi14m11  olgi14n07  olgi15f12  olgi15g01  olgi16e04  olgi16f24  olgi16g02  olgi16l04  olgi16n06  olgi16o19  olgi17b06  olgi17i24  olgi17j13  olgi17m07  olgi17o11  olgi18c01  olgi18d03  olgi18d18  olgi18i01  olgi19k18  olgi1l02  olgi20e08  olgi20f03  olgi20j03  olgi20l19  olgi20m08  olgi20o16  olgi21j11  olgi21o13  olgi22b04  olgi22c13  olgi22c24  olgi22j21  olgi22k05  olgi22m04  olgi22o14  olgi23h22  olgi24d05  olgi24e02  olgi24e10  olgi24i15  olgi24n02  olgi26j24  olgi26k24  olgi26l04  olgi26n13  olgi26o03  olgi26p10  olgi27e22  olgi29i07  olgi2h06  olgi2j22  olgi2p19  olgi30h01  olgi31b21  olgi31g08  olgi31i21  olgi31m11  olgi32f09  olgi32j21  olgi33b14  olgi34i02  olgi34j21  olgi36d14  olgi39c01  olgi39c19  olgi39h12  olgi3a21  olgi3l01  olgi3p11  olgi40h06  olgi40h18  olgi40j11  olgi41b16  olgi41p24  olgi42c05  olgi43e08  olgi44e09  olgi44e19  olgi44j15  olgi44m16  olgi44n22  olgi45d13  olgi45o04  olgi46a22  olgi46f01  olgi47a14  olgi47c23  olgi47d04  olgi47o22  olgi49f04  olgi49i06  olgi49m13  olgi49o05  olgi49p08  olgi4n04  olgi50a20  olgi50d08  olgi50h13  olgi50k04  olgi52b07  olgi52h10  olgi53f01  olgi54h12  olgi55j21  olgi55k02  olgi56j10  olgi57k09  olgi58a03  olgi58a12  olgi58i04  olgi58k11  olgi58n01  olgi58p01  olgi5e06  olgi5i23  olgi60a05  olgi60b22  olgi60g18  olgi60h22  olgi61j02  olgi61j05  olgi61j24  olgi61n13  olgi62b07  olgi62i10  olgi62k01  olgi62o20  olgi63a22  olgi63l24  olgi64e05  olgi64m15  olgi64p20  olgi65n15  olgi6n09  olgi7f21  olgi7k01  olgi8k14  olgi9f02  olgi9i08  olgi9l05  olgi9o12 
olki 82 cDNA [Download: FASTA]
olki10e16  olki10f22  olki11k13  olki11p10  olki12b22  olki12n08  olki14h16  olki14p18  olki15d01  olki16b17  olki17d01  olki17f18  olki18o12  olki19k01  olki20b09  olki22i02  olki23m21  olki26b01  olki27j01  olki28p21  olki29d04  olki29m11  olki2n11  olki31d24  olki33a23  olki35b07  olki35f05  olki35j18  olki36f21  olki37m16  olki38p10  olki39f19  olki39l14  olki3f01  olki3k18  olki41d13  olki41g09  olki42c08  olki44i22  olki44o11  olki45b23  olki46d14  olki47a19  olki47c04  olki47n06  olki48e01  olki4c08  olki4m18  olki51h04  olki51l02  olki51o08  olki52c12  olki52e14  olki52i20  olki53c12  olki53h20  olki54b18  olki54p24  olki55h14  olki56a23  olki56c09  olki56g04  olki56i02  olki56j03  olki57d01  olki58k22  olki59f03  olki59f22  olki60g11  olki60i06  olki61o23  olki64j08  olki64k15  olki65c21  olki65k01  olki6e10  olki7k06  olki7l22  olki7o14  olki8f03  olki8k15  olki9b23 
olsp 137 cDNA [Download: FASTA]
olsp10h21  olsp10o17  olsp11a05  olsp11c12  olsp11e20  olsp11k11  olsp11n20  olsp12f02  olsp12f13  olsp12g03  olsp12j10  olsp12p07  olsp13n02  olsp14a04  olsp14e02  olsp14j11  olsp14o24  olsp15a04  olsp15e16  olsp15o06  olsp16b11  olsp16e11  olsp17d13  olsp17p14  olsp18b05  olsp18e18  olsp18i01  olsp18l08  olsp19b02  olsp19n18  olsp1c01  olsp1m01  olsp20a16  olsp21k13  olsp21m21  olsp22l13  olsp23p06  olsp24g16  olsp24n24  olsp25f11  olsp25i24  olsp26b03  olsp26d19  olsp26p06  olsp27k05  olsp28g01  olsp28j06  olsp28p05  olsp29j01  olsp29l11  olsp2c07  olsp2l21  olsp30d22  olsp31j08  olsp32b07  olsp32k08  olsp32l12  olsp32o23  olsp33d04  olsp33l12  olsp34j11  olsp35a07  olsp35j23  olsp35k09  olsp36g06  olsp36h11  olsp36n10  olsp37a07  olsp37b15  olsp37d03  olsp37g22  olsp37n06  olsp37o18  olsp39e12  olsp3d13  olsp40e20  olsp40k14  olsp41l15  olsp42b20  olsp42n22  olsp42o09  olsp43d02  olsp43g17  olsp43m01  olsp43m10  olsp43m21  olsp44f03  olsp45h19  olsp45m03  olsp45n13  olsp46c07  olsp46j05  olsp47o23  olsp4k04  olsp4n13  olsp50f17  olsp50g13  olsp50i17  olsp50n24  olsp51i23  olsp51k06  olsp51p01  olsp54e11  olsp54g06  olsp55a19  olsp55p19  olsp56m23  olsp57l17  olsp58c21  olsp58l15  olsp59c05  olsp59m17  olsp5b23  olsp5c23  olsp60c13  olsp60i18  olsp61d06  olsp61f05  olsp61m13  olsp62a01  olsp62c20  olsp62f02  olsp62k12  olsp62n20  olsp63j15  olsp63l24  olsp64n02  olsp65a17  olsp65d10  olsp65h21  olsp6l15  olsp7b18  olsp8f01  olsp8k20  olsp8n04  olsp9c14  olsp9p08 
olte 24 cDNA [Download: FASTA]
olte10b24  olte12n04  olte16g19  olte29n16  olte34d23  olte39c11  olte39l23  olte40o23  olte42o07  olte45n23  olte46h20  olte53c13  olte54b23  olte58a01  olte59h20  olte5m12  olte63f24  olte64g23  olte64i20  olte69e06  olte70c05  olte70j09  olte8h18  olte8m13 
olova 11 cDNA [Download: FASTA]
olova10f20  olova16a22  olova27o21  olova38h23  olova40b15  olova43p07  olova4p01  olova51e19  olova56p07  olova58e16  olova5d17 

Before using Assemble Viewer, please ensure that you have the latest version of Java. If you are not using the latest Java version, please download it here. http://java.com/ja/download/


Contig information - 1
Name Contig1
Clone count 3 clones
Length 582
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit classical MHC class molecule, alpha-chain [Oryzias latipes]
Score 780
Evalue 2.18585e-81
Detail
Sequence [Download: FASTA]
>Contig1
TCCTCCAGAAGTCGTCCTCCTCTGCAGTCAGCTGTCATGCTACAGGTTTCTATCCTGACAGAGCT
GAACTGCTGTGGAGGAGAGATGGAGAGGAGATCCATGAAGGAGTGGAGAAAGGACAGATCCTCCC
CAACAATGATGGAACTTTCCAGATGAGCGTTGATCTCCAACCTCCATCAGGAGAAGACATGCAGA
GATATGAATGTGTGTTTCAGCTCTCTGGAGTCAAAGAAGACGTCATCACTAAACTGGAGAAAGCA
AAGATCAGAACCAATGAAGGTTCTTCCAGTCAGATGTTGATCATCATTGGTGTCCTTGTTGCTGT
TATCGCTGTCGTTCTCTCTGTGTCTGCATTCATTTTTTACAAGAAGATGAACTTTTTCAATTTGG
TCAAGCCTCCACCATCTCCTGTAGACAACAAGGAGATCCAGCAGCAGATGCTGCAACCAGAAAAT
CCATCAGCCTGAGAGATGAACTCTCCTCTGAACAGTTTGGGAAATAAATCTGCAAAATATTAAGG
AGCAAAGAAAAAGCCCTTTTTCCCTGTGAAGTGCAATTTTCTTATGATGATTAAAAAAAAAA

Contig information - 2
Name Contig2
Clone count 139 clones
Length 1183
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit classical MHC class I molecule, alpha-chain [Oryzias latipes]
Score 1734
Evalue 0
Detail
Sequence [Download: FASTA]
>Contig2
GGTTTTCTTGCATTTATTCTCTAACGTTTGATCTAGAACCTCAGTAACAGATTCTCGTCGGACGG
TCTCTGACTGAGATCCTCAGAAGATCCAGAATGAAGATCCAATTGATTCTGTGTTTTCTGGGACT
GAGTTTCCACGGCGCTGCTGCAGTGTCTCATTCTCTGAAGTATTTCTACACCGCTTCCTCTCAAG
TCCCGAACTTCCCAGAGTTCGTGTCTGTTGGTTTGGTTGATGATGCTCAGATTAGTCACTATGAC
AGCGACACCAGAATGACGGTTCCTAAACAGGACTGGATGGCCATGGATGAACAGTACTGGAAGAG
ACAAACTGATATCGGTCTGGGTCACCAGCAGACCTTCAAAGCCAACATTGAAATATTAAAGCCGC
GCTTCAACCAAACTGGAGGTGTTCATGTGTTTCAGTGGATGTACGGATGTGAGTGGGATGAGGAG
ACTGGAGCGGTCAACAGTTTTCATCAATACGGTTATGATGGAGAAGACTTCATTGCTCTTGACCT
GAAGACAGAATCATGGATTGCTCCAAAACAGCAGGCTGAAATCACCAAACACAAGTGGGACAATG
ACAAAGCTTTAATGGCAGGACGGAAGAACTACCTAACCCAGATTTGTCCTGAATGGCTGAAGAAA
TACGTGAATTATGGAAGCAGCTCTCTGATGAGAAAAAGTTCTTCCATCAGTGTCTCTCCTCCAGA
AGTCGTCCTCCTCTGCAGTCAGCTGTCATGCTACAGGTTTTCTATCCCTGACAGAGCTGAACTGC
TGTGGAGGAGAGATGGAGAGGAGATCCATGAAGGAGTGGAGAAAGGACAGATCCTCCCCAACAAT
GATGGAACTTTCCAGATGAGCGTTCATCTCCAACCTCCATCAGGAGAAGACATGCAGAGATATGA
ATGTGTGTTTCAGCTCTCTGGAGTCAAAGAAGACGTCATCACTAAACTGGAGAAAGCAAAGATCA
GAACCAATGAAGGTTCTTCCAGTCAGATGTTGATCATCATTGGTGTCCTCGCTGCTGTTATGGCT
GTCGTTGCTGTGTCTGCATTCATTTTTTACAAGAAGAAGAACGCCAAGCGTCCACCATCTCCTGT
AGACAACAAGGAGATCCAGGAGCAGATGCTTCAACCAGAAAATCCATCAGCCTAAGAGATGAACT
CTCCTCTGAACAG
/medaka