About Virtual Display
Clustered correlation display of medaka EST data.A total of 47902 contigs were obtained by fasta analysis of ca. 500000 EST sequences derived from 11 cDNA libraries. The number of EST constituents assigned to 11 cDNA libraries was scored for each contig, producing a two-way expression profile, i.e. 40602 contigs versus 11 libraries. This matrix table represented the primary data for further computations. After normalization of contigs with 11 or more constituents, average-linkage hierarchical clustering was carried out by Cluster 3.0.
Similarities between contigs or libraries were estimated using uncentered correlation. We call this heat map-type figure Virtural Display (VD).
Virtual Display is here。