Strains

cDNA/BAC/Fosmid

Plasmid for Knock-in Experiments

Information

Medaka Tools

Medaka Strain
in Publications

References
Lectures of
a conference

Related documents

Biological experiments for elementary, junior high and high school students (Japanese)
Medaka experiments that anyone can do (Japanese)
Life of my teacher Tatsuo AIDA (Japanese)

Featured Link

From spawning to hatching of medaka ~nibb×niconico 
A checklist of the parasites of medaka 
medaka SNP(Beta)
Official Endocrine Disruption Website
M-marker 2009
Ensembl Medaka
M-Base
NBRP Medaka Genome Project
MEPD
Genomicus - Synteny browser -
ZFIN
ZIRC
UTGB Medaka
UCSC In-Silico PCR
The Fish Biology Journal of Medaka (Vol.1 - Vol.3)
The Fish Biology Journal of Medaka (Vol.4 - Vol.11)
Introduction to Medaka (NBRP Online Forum 2020)

Medaka full length cDNA  VD

Library Tissues Development Entries Cluster
5' 3' Total 5' 3' Total
olea   Embryo   ST22   22258 22215 44473 6077 5554 11631
oleb   Embryo   ST35   23134 23127 46261 7426 6876 14302
olec   Fry   ST40   23000 23138 46138 6532 6211 12743
olvl   Male liver   Adult males   18867 18978 37845 2497 2376 4873
olli   Female liver   Adult females   23315 23534 46849 2678 2558 5236
olbr   Brain   Adult males and females   22582 22442 45024 7763 6984 14747
olgi   Gill   Adult males and females   22803 22826 45629 6793 6323 13116
olki   Kidney   Adult males and females   23150 22979 46129 6305 5934 12239
olsp   Spleen   Adult males and females   23402 23433 46835 5060 4792 9852
olte   Testis   Adult males   24301 24342 48643 7078 6852 13930
olova   Ovary   Adult females   22934 23184 46118 5686 5521 11207
merge 249746 250198 499944 26314 21588 47902
Non redundant full length cDNA sequences
olvl, olea, oleb, olec, olbr, olova, olte 15381 15381

Medaka cDNA for MF01

Library Tissues Development Entries Cluster
5' 3' Total 5' 3' Total
MF01ALA   Liver library   Male and female adult liver mRNA   12258 12716 24974 2360 2050 4410
MF01ASD   Female whole body library   Adult female whole body mRNA   13456 14048 27504 3390 3353 6743
MF01FFA   Fry full-length library   Stage 40 whole embryoes mRNA   11242 11658 22900 2623 2507 5130
MF01FSA   Fry library   Stage 40 whole embryoes mRNA   15602 15990 31592 5508 5179 10687
MF01SSA   Embryo library   Stage 23 whole embryoes mRNA   14530 14167 28697 5495 4846 10341
MF01SSB   Embryo library   Stage 23 whole embryoes mRNA   12534 12662 25196 4897 4480 9377
MF015DA   Embryo library   Stage 35 whole embryoes mRNA   11886 11811 23697 5562 5046 10608

Full sequence for MF01FFA and MF015DA

Library Entries
MF01FFA 291
MF015DA 454

Medaka cDNA for HNI    

Library Tissues Entries
OLa adult male and female whole body 1669
OLb cultured cell 2209
OLc cultured cell with 20J/m2 UV ± PR 2303
OLd Ovary 3479
OLe Liver from male and female 1272
OLf cultured cell with γ-irrdiation 1664

EST clones by Nagahama lab in NIBB    

Library Tissues Entries
OLA03 Whole embryos at 7 days post fertilization 4915
OLA04 Fly just after hatching 3045
OLA05 Adult ovary 2400
OLA06 Fly at 5 days post hatching 2739
OLA07 Fly at 10 days post hatching 1666
OLA08 Fly at 15 days post hatching 1570

Medaka BAC clone

Library Source Entries
5' 3' Total
ola1   O. latipes·Hd-rR   55077 54940 110017

Medaka Fosmid clone

Library Source Entries
5' 3' Total
golwf 2004   O. latipes·Hd-rR   47018 59145 106163
golwf 2005   O. latipes·Hd-rR   178175 168774 346949

Clone Search

Clone Advanced Search
Resource Type
Accession no  (ex. DK230587)
Clone name  (ex. olvl10a01)
Direction 5'  3'
Homologous gene
OR  AND 		 (ex. ribosomal protein)
/medaka