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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
9749R-3 |
| Symbol |
Abi |
Full Name |
Abelson Interacting Protein |
| CG No |
CG9749 |
Old CG No |
CG9749 |
| Synonyms |
dAbi, Abi-1, CG9749, Ablphilin, Abi, Abelson Interacting Protein |
| Accession No (Link to NCBI) |
NM_057915.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Williams AM, Donoughe S, Munro E, Horne-Badovinac S.<br> Fat2 polarizes the WAVE complex in <i>trans</i> to align cell protrusions for collective migration.<br> Elife (2022) 11
[
PubMed ID = 36154691
]
[
RRC reference
]
Sherrard KM, Cetera M, Horne-Badovinac S.<br> DAAM mediates the assembly of long-lived, treadmilling stress fibers in collectively migrating epithelial cells in <i>Drosophila</i>.<br> Elife (2021) 10
[
PubMed ID = 34812144
]
[
RRC reference
]
Fairchild MJ, Islam F, Tanentzapf G.<br> Identification of genetic networks that act in the somatic cells of the testis to mediate the developmental program of spermatogenesis.<br> PLoS Genet (2017) 13(9) e1007026
[
PubMed ID = 28957323
]
[
RRC reference
]
Barlan K, Cetera M, Horne-Badovinac S.<br> Fat2 and Lar Define a Basally Localized Planar Signaling System Controlling Collective Cell Migration.<br> Dev Cell (2017) 40(5) 467-477.e5
[
PubMed ID = 28292425
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G.<br> A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network.<br> Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgATGGAGTCCCAGATGAACCAC |
| Primer Seq. 3' |
aatctagaggtaccGAAGCCGTCGACATTCGCTTT |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 ATGGAGTCCC AGATGAACCA CATCGCCCAG ACGGTGCATA TCCACAAGGA GAAGGTGGCC
0061 AGGAGAGAGA TTGGCGTGCT TACGGCTAAC AAGGTGAGCT CGCGCCAGTT TAAGATCGTG
0121 GCGCCCATCA ATCCGGAGAA GCCCATTCAA GTATGTGCGC AAGCCCATCG ACTACTCGAT
0181 GTTGGACGAG ATTGGCCACG GCATTAACTC GGCCCAGCAC TcGCAGGTGC GACAGAAACA
0241 TCgGGGCTCC AGCCATGGGT CCGTGCAATC CTTATTGCCG CCGTCGGTGG GACCTCCGCC
0301 AACCACGAAG CCCCCAACTC CGCCGCAGAT GTCGCGAGCT GGGAACACTG GCACACTGGG
0361 CAAGTCGGTC AGCAATACCG GGACACTGGG CAAGAGTTCG CGGGAGTACC GCACTCCGNC
0421 TGTGGTCAAT CCACCACAgG TGCCATCGCA CTACGCTCCC AACTATCCTA TTGGGCATCC
0481 AAAGCGAATG TCTGACGGCt TC |
| in silico PCR Fragment |
0001 ATGGAGTCCC AGATGAACCA CATCGCCCAG ACGGTGCATA TCCACAAGGA GAAGGTGGCC
0061 AGGAGAGAGA TTGGCGTGCT TACGGCTAAC AAGGTGAGCT CGCGCCAGTT TAAGATCGTG
0121 GCGCCCATCA ATCCGGAGAA GCCCA-TCAA GTATGTGCGC AAGCCCATCG ACTACTCGAT
0181 GTTGGACGAG ATTGGCCACG GCATTAACTC GGCCCAGCAC TCGCAGGTGC GACAGAAACA
0241 TCGGGGCTCC AGCCATGGGT CCGTGCAATC CTTATTGCCG CCGTCGGTGG GACCTCCGCC
0301 AACCACGAAG CCCCCAACTC CGCCGCAGAT GTCGCGAGCT GGGAACACTG GCACACTGGG
0361 CAAGTCGGTC AGCAATACCG GGACACTGGG CAAGAGTTCG CGGGAGTACC GCACTCCGCC
0421 TGTGGTCAAT CCACCACAGG TGCCATCGCA CTACGCTCCC AACTATCCTA TTGGGCATCC
0481 AAAGCGAATG TC-GACGGCT TC |
| Assemble Data |
<PRE>
9749R-3.IR_full 1 ATGGAGTCCCAGATGAACCACATCGCCCAGACGGTGCATATCCACAAGGAGAAGGTGGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9749R-3.in silico 1 ATGGAGTCCCAGATGAACCACATCGCCCAGACGGTGCATATCCACAAGGAGAAGGTGGCC 60
9749R-3.IR_full 61 AGGAGAGAGATTGGCGTGCTTACGGCTAACAAGGTGAGCTCGCGCCAGTTTAAGATCGTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9749R-3.in silico 61 AGGAGAGAGATTGGCGTGCTTACGGCTAACAAGGTGAGCTCGCGCCAGTTTAAGATCGTG 120
9749R-3.IR_full 121 GCGCCCATCAATCCGGAGAAGCCCA<span class="snp"><tt>T</tt></span>TCAAGTATGTGCGCAAGCCCATCGACTACTCGAT 180
|||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||
9749R-3.in silico 121 GCGCCCATCAATCCGGAGAAGCCCA<span class="snp"><tt>-</tt></span>TCAAGTATGTGCGCAAGCCCATCGACTACTCGAT 180
9749R-3.IR_full 181 GTTGGACGAGATTGGCCACGGCATTAACTCGGCCCAGCACTCGCAGGTGCGACAGAAACA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9749R-3.in silico 181 GTTGGACGAGATTGGCCACGGCATTAACTCGGCCCAGCACTCGCAGGTGCGACAGAAACA 240
9749R-3.IR_full 241 TCGGGGCTCCAGCCATGGGTCCGTGCAATCCTTATTGCCGCCGTCGGTGGGACCTCCGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9749R-3.in silico 241 TCGGGGCTCCAGCCATGGGTCCGTGCAATCCTTATTGCCGCCGTCGGTGGGACCTCCGCC 300
9749R-3.IR_full 301 AACCACGAAGCCCCCAACTCCGCCGCAGATGTCGCGAGCTGGGAACACTGGCACACTGGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9749R-3.in silico 301 AACCACGAAGCCCCCAACTCCGCCGCAGATGTCGCGAGCTGGGAACACTGGCACACTGGG 360
9749R-3.IR_full 361 CAAGTCGGTCAGCAATACCGGGACACTGGGCAAGAGTTCGCGGGAGTACCGCACTCCG<span class="snp"><tt>N</tt></span>C 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|
9749R-3.in silico 361 CAAGTCGGTCAGCAATACCGGGACACTGGGCAAGAGTTCGCGGGAGTACCGCACTCCG<span class="snp"><tt>C</tt></span>C 420
9749R-3.IR_full 421 TGTGGTCAATCCACCACAGGTGCCATCGCACTACGCTCCCAACTATCCTATTGGGCATCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9749R-3.in silico 421 TGTGGTCAATCCACCACAGGTGCCATCGCACTACGCTCCCAACTATCCTATTGGGCATCC 480
9749R-3.IR_full 481 AAAGCGAATGTC<span class="snp"><tt>T</tt></span>GACGGCTTC 502
||||||||||||<span class="snp"><tt> </tt></span>|||||||||
9749R-3.in silico 481 AAAGCGAATGTC<span class="snp"><tt>-</tt></span>GACGGCTTC 502
</PRE>
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
8 |
NM_057915.3 |
CG9749-RA (Abi), mRNA |
| 0 |
0 |
1 |
5 |
3 |
NM_057984.3 |
CG3460-RA (Nmd3), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_079763.2 |
CG6868-RA (tld), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_132725.2 |
CG1461-RA (CG1461), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_138041.2 |
CG4049-RA (CG4049), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_165278.1 |
CG10501-RB, transcript variant B (amd), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_057244.3 |
CG10501-RA, transcript variant A (amd), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_164966.2 |
CG6464-RA (salm), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_166924.1 |
CG4199-RF, transcript variant F (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_166921.1 |
CG4199-RE, transcript variant E (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_166923.1 |
CG4199-RC, transcript variant C (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_130620.2 |
CG4199-RD, transcript variant D (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_166922.1 |
CG4199-RB, transcript variant B (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_166925.1 |
CG4199-RA, transcript variant A (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_001043239.1 |
CG34108-RA (CG34108), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_058006.3 |
CG2720-RA (Hop), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_057489.3 |
CG4722-RA (bib), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_001042869.1 |
CG34125-RA (CG34125), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_144304.1 |
CG18662-RA (CG18662), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_079884.3 |
CG1449-RA (zfh2), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_137975.1 |
CG30183-RA (CG30183), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001038725.1 |
CG40478-RE, transcript variant E (Dyrk3), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001038723.1 |
CG40478-RC, transcript variant C (Dyrk3), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001038721.1 |
CG40478-RA, transcript variant A (Dyrk3), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001038724.1 |
CG40478-RD, transcript variant D (Dyrk3), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001038722.1 |
CG40478-RB, transcript variant B (Dyrk3), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001015080.1 |
CG40478-PC.3 (CG40478), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001015079.1 |
CG40478-PB.3 (CG40478), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001015078.1 |
CG40478-PA.3 (CG40478), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_164411.2 |
CG4896-RB, transcript variant B (CG4896), mRNA |
|
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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