|
|
| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
|
| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
7233R-4 |
| Symbol |
Snoo |
Full Name |
Sno oncogene |
| CG No |
CG34421 |
Old CG No |
CG7233 |
| Synonyms |
FBgn0085450, snoN, CG7233, CG7093, Snoo, CG34421, SnoA, SnoI, SnoN2, SnoN, dSki, DskiL, dSno, l(2)SH1402, l(2)SH2 1402 |
| Accession No (Link to NCBI) |
NM_135322.1 |
| Inserted Chr. |
ll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Eusebio N, Tavares L, Pereira PS.
CtBP represses Dpp-dependent Mad activation during Drosophila eye development.
Dev Biol (2018) 442(1) 188-198
[
PubMed ID = 30031756
]
[
RRC reference
]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGACGAGTGCCACCAAATCGCT |
| Primer Seq. 3' |
aatctagaggtaccGCAGGATCTTGGCGGCCTTGA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 GACGAGTGCC ACCAAATCGC TCCAGGGACC AGGACACGCC CTCACCACCG CCGGTGTCCT
0061 CGACATAGTC ACCAATGGCA GGAGCNGAGA GTCCTGGCCT CAATGGCAAG TgCCAAGCAT
0121 CTCCGCCAGT TGTGGCGCTG ATCAAAAAGG AAATACTCAG TTCGCCGGAG CCGCAGGATC
0181 TGCATCATCA CGAATGCTCG ACGAGGGGCA CGCCGCACAC AGATATATTC GCCTGCCACG
0241 CCACCCCGTG AACTATCGCA GCCGATTTTA TCGGTGGCAG ATGCGGGATG TGGAGAGTTG
0301 TACGAGACGA AACTGGAGGG CAAGACCATT GGATGCTTNT CCGTGGGCGG CGAGATGAGA
0361 CTGTGCCTGC CACAGTTTTC TCAACAATGT TCTCAATGAC TTTTCGCTGG AGCAGATCAA
0421 CAGGATCTTC GATGAGCTGG GCATCTATTG CTCGCAGTGT ACGCACGATC AGCTGGTGGA
0481 GTTCAAgGCC GCCAAGANCN NGC |
| in silico PCR Fragment |
0001 GACGAGTGCC ACCAAATCGC TCCAGGGACC AGGACACGCC CTCACCACCG CCGGTGTCCT
0061 CGACATAGTC ACCAATGGCA GGAGC-GAGA GTCCTGGCCT CAATGGCAAG TGCCAAGCAT
0121 CTCCGCCAGT TGTGGCGCTG ATCAAAAAGG AAATACTCAG TTCGCCGGAG CCGCAGGATC
0181 TGCATCATCA CGAATGCTCG ACGAGGGGCA CGCCGC-CAC AGATATATTC GCCTGCCACG
0241 CCACCCCGTG AACTATCGCA GCCGATTTTA TCGGTGGCAG ATGCGGGATG TGGGGAGTTG
0301 TACGAGACGA AACTGGAGGG CAAGACCATT GGATGCTTCT CCGTGGGCGG CGAGATGAGA
0361 CTGTGCCTGC CACAG-TTTC TCAACAATGT TCTCAATGAC TTTTCGCTGG AGCAGATCAA
0421 CAGGATCTTC GATGAGCTGG GCATCTATTG CTCGCAGTGT ACGCACGATC AGCTGGTGGA
0481 GTTCAAGGCC GCCAAGATCC TGC |
| Assemble Data |
7233R-4.IR_full 1 GACGAGTGCCACCAAATCGCTCCAGGGACCAGGACACGCCCTCACCACCGCCGGTGTCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7233R-4.in silico 1 GACGAGTGCCACCAAATCGCTCCAGGGACCAGGACACGCCCTCACCACCGCCGGTGTCCT 60
7233R-4.IR_full 61 CGACATAGTCACCAATGGCAGGAGCNGAGAGTCCTGGCCTCAATGGCAAGTGCCAAGCAT 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
7233R-4.in silico 61 CGACATAGTCACCAATGGCAGGAGC-GAGAGTCCTGGCCTCAATGGCAAGTGCCAAGCAT 120
7233R-4.IR_full 121 CTCCGCCAGTTGTGGCGCTGATCAAAAAGGAAATACTCAGTTCGCCGGAGCCGCAGGATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7233R-4.in silico 121 CTCCGCCAGTTGTGGCGCTGATCAAAAAGGAAATACTCAGTTCGCCGGAGCCGCAGGATC 180
7233R-4.IR_full 181 TGCATCATCACGAATGCTCGACGAGGGGCACGCCGCACACAGATATATTCGCCTGCCACG 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
7233R-4.in silico 181 TGCATCATCACGAATGCTCGACGAGGGGCACGCCGC-CACAGATATATTCGCCTGCCACG 240
7233R-4.IR_full 241 CCACCCCGTGAACTATCGCAGCCGATTTTATCGGTGGCAGATGCGGGATGTGGAGAGTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
7233R-4.in silico 241 CCACCCCGTGAACTATCGCAGCCGATTTTATCGGTGGCAGATGCGGGATGTGGGGAGTTG 300
7233R-4.IR_full 301 TACGAGACGAAACTGGAGGGCAAGACCATTGGATGCTTNTCCGTGGGCGGCGAGATGAGA 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
7233R-4.in silico 301 TACGAGACGAAACTGGAGGGCAAGACCATTGGATGCTTCTCCGTGGGCGGCGAGATGAGA 360
7233R-4.IR_full 361 CTGTGCCTGCCACAGTTTTCTCAACAATGTTCTCAATGACTTTTCGCTGGAGCAGATCAA 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
7233R-4.in silico 361 CTGTGCCTGCCACAG-TTTCTCAACAATGTTCTCAATGACTTTTCGCTGGAGCAGATCAA 420
7233R-4.IR_full 421 CAGGATCTTCGATGAGCTGGGCATCTATTGCTCGCAGTGTACGCACGATCAGCTGGTGGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7233R-4.in silico 421 CAGGATCTTCGATGAGCTGGGCATCTATTGCTCGCAGTGTACGCACGATCAGCTGGTGGA 480
7233R-4.IR_full 481 GTTCAAGGCCGCCAAGANCNNGC 503
||||||||||||||||| | ||
7233R-4.in silico 481 GTTCAAGGCCGCCAAGATCCTGC 503
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_135322.1 |
CG7233-RA (snoN), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_206492.1 |
CG33332-RA (CG33332), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_141156.2 |
CG11241-RA (CG11241), mRNA |
| 0 |
0 |
2 |
1 |
4 |
NM_141369.1 |
CG1153-RA (Osi7), mRNA |
| 0 |
0 |
1 |
6 |
12 |
NM_166125.2 |
CG18255-RA, transcript variant A (Strn-Mlck), mRNA |
| 0 |
0 |
1 |
6 |
11 |
NM_166126.1 |
CG18255-RC, transcript variant C (Strn-Mlck), mRNA |
| 0 |
0 |
1 |
6 |
10 |
NM_141277.2 |
CG1172-RA (CG1172), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_142196.2 |
CG5044-RA, transcript variant A (CG5044), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_169649.1 |
CG5044-RB, transcript variant B (CG5044), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_169504.1 |
CG32473-RC, transcript variant C (CG32473), mRNA |
| 0 |
0 |
1 |
4 |
10 |
NM_166129.2 |
CG18255-RD, transcript variant D (Strn-Mlck), mRNA |
| 0 |
0 |
1 |
4 |
9 |
NM_166130.1 |
CG18255-RE, transcript variant E (Strn-Mlck), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_079596.2 |
CG17358-RA, transcript variant A (Taf12), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_169421.1 |
CG17358-RC, transcript variant C (Taf12), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_169420.1 |
CG17358-RB, transcript variant B (Taf12), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_135082.2 |
CG6604-RA (H15), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_136284.2 |
CG11634-RA (CG11634), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_165917.1 |
CG8815-RD, transcript variant D (Sin3A), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_165915.1 |
CG8815-RB, transcript variant B (Sin3A), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_165916.1 |
CG8815-RC, transcript variant C (Sin3A), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_136955.2 |
CG8815-RA, transcript variant A (Sin3A), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_167972.1 |
CG32485-RA (CG32485), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_167080.1 |
CG32742-RA (l(1)G0148), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_206674.1 |
CG32684-RE, transcript variant E (alpha-Man-I), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_206673.1 |
CG32684-RF, transcript variant F (alpha-Man-I), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_206675.1 |
CG32684-RD, transcript variant D (alpha-Man-I), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_167223.1 |
CG32684-RA, transcript variant A (alpha-Man-I), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_132792.2 |
CG6227-RA (CG6227), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_176161.1 |
CG33007-RA (CG33007), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_206672.1 |
CG32684-RG, transcript variant G (alpha-Man-I), mRNA |
|
|
|
