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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
discarded
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
6904R-3 |
| Symbol |
CG6904 |
Full Name |
CG6904 |
| CG No |
CG6904 |
Old CG No |
CG6904 |
| Synonyms |
CG6940, anon-WO0118547.108, CG6904 |
| Accession No (Link to NCBI) |
NM_169610.1 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Saez I, Duran J, Sinadinos C, Beltran A, Yanes O, Tevy MF, Martínez-Pons C, Milán M, Guinovart JJ.<br> Neurons have an active glycogen metabolism that contributes to tolerance to hypoxia.<br> J Cereb Blood Flow Metab (2014) 34(6) 945-55
[
PubMed ID = 24569689
]
[
RRC reference
]
Sinadinos C, Valles-Ortega J, Boulan L, Solsona E, Tevy MF, Marquez M, Duran J, Lopez-Iglesias C, Calbó J, Blasco E, Pumarola M, Milán M, Guinovart JJ.<br> Neuronal glycogen synthesis contributes to physiological aging.<br> Aging Cell (2014) 13(5) 935-45
[
PubMed ID = 25059425
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGAGAACCGCTGGAACTTCGAG |
| Primer Seq. 3' |
aatctagaggtaccCATTCGTGGAAGTGGGCGACA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 NAGAACCGCT GGAACTTCGA GGGTGGCATG GGAGGTGGCC AACAAAGGTG NGGCGGTATT
0061 TANCACGGTG ATCCGGTCGA AAGGCATATG TCTCCACCGA GGAGATGGGC GAGCAGTTGT
0121 GTATGATGGG TCCCTACAAG GAGCACTGTG CCCGCACCGA GATGGAGGAG ATGGAGTTCC
0181 CCAGGGGAAA CCCCCTACTA GACGCTGTCA ACTCATTGCG CNTCGCGAGG CTATAAAATC
0241 CACACCGGTC GCTGGCTGGT GGACGGAAAT CCTCAATTAA TCCTGNTTCG ATATTGGATC
0301 AGCCGCTTGG AAGCTGGATC AGTTCAAATC GGAGATGTGG GAGAAGTGCC ATATTGGAAT
0361 ACCTCATTTG GATATCGAGA CGAACGATGC CATTATCCTT GGCTTTATGA TTGCCGAGTT
0421 CCTGGAGGAG TTCCGCAACT TTGCCGTGAC TTATTCGCAG AACAACGAAT TGAGCGCTCC
0481 GAGGATTGTC GCCCACTTCC ACGAATG |
| in silico PCR Fragment |
0001 GAGAACCGCT GGAACTTCGA -GGTGGCATG GGAGGTGGCC AAC-AAGGTG -GGCGGTATT
0061 TA-CACGGTG ATCCGGTCG- AAGGCATATG TCTCCACCGA GGAGATGGGC GAGCAGTTGT
0121 GTATGATGGG TCCCTACAAG GAGCACTGTG CCCGCACCGA GATGGAGGAG ATGGAGTTCC
0181 CCAGGGGAAA CCCCCTACTA GACGCTGTCA ACTCATTGCG C-TCGCGAGG CTATAAAATC
0241 CACACCGGTC GCTGGCTGGT GGACGGAAAT CCTCAATTAA TCCTG-TTCG ATATTGGATC
0301 AGCCGCTTGG AAGCTGGATC AGTTCAAATC GGAGATGTGG GAGAAGTGCC ATATTGGAAT
0361 ACCTCATTTG GATATCGAGA CGAACGATGC CATTATCCTT GGCTTTATGA TTGCCGAGTT
0421 CCTGGAGGAG TTCCGCAACT TTGCCGTGAC TTATTCGCAG AACAACGAAT TGAGCGCTCC
0481 GAGGATTGTC GCCCACTTCC ACGAATG |
| Assemble Data |
<PRE>
6904R-3.IR_full 1 AGAACCGCTGGAACTTCGA<span class="snp"><tt>G</tt></span>GGTGGCATGGGAGGTGGCCAAC<span class="snp"><tt>A</tt></span>AAGGTG<span class="snp"><tt>N</tt></span>GGCGGTATT 59
|||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||<span class="snp"><tt> </tt></span>|||||||||
6904R-3.in silico 1 AGAACCGCTGGAACTTCGA<span class="snp"><tt>-</tt></span>GGTGGCATGGGAGGTGGCCAAC<span class="snp"><tt>-</tt></span>AAGGTG<span class="snp"><tt>-</tt></span>GGCGGTATT 59
6904R-3.IR_full 61 TA<span class="snp"><tt>N</tt></span>CACGGTGATCCGGTCG<span class="snp"><tt>A</tt></span>AAGGCATATGTCTCCACCGAGGAGATGGGCGAGCAGTTGT 119
||<span class="snp"><tt> </tt></span>||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||
6904R-3.in silico 61 TA<span class="snp"><tt>-</tt></span>CACGGTGATCCGGTCG<span class="snp"><tt>-</tt></span>AAGGCATATGTCTCCACCGAGGAGATGGGCGAGCAGTTGT 119
6904R-3.IR_full 121 GTATGATGGGTCCCTACAAGGAGCACTGTGCCCGCACCGAGATGGAGGAGATGGAGTTCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6904R-3.in silico 121 GTATGATGGGTCCCTACAAGGAGCACTGTGCCCGCACCGAGATGGAGGAGATGGAGTTCC 179
6904R-3.IR_full 181 CCAGGGGAAACCCCCTACTAGACGCTGTCAACTCATTGCGC<span class="snp"><tt>N</tt></span>TCGCGAGGCTATAAAATC 239
|||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||
6904R-3.in silico 181 CCAGGGGAAACCCCCTACTAGACGCTGTCAACTCATTGCGC<span class="snp"><tt>-</tt></span>TCGCGAGGCTATAAAATC 239
6904R-3.IR_full 241 CACACCGGTCGCTGGCTGGTGGACGGAAATCCTCAATTAATCCTG<span class="snp"><tt>N</tt></span>TTCGATATTGGATC 299
|||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||
6904R-3.in silico 241 CACACCGGTCGCTGGCTGGTGGACGGAAATCCTCAATTAATCCTG<span class="snp"><tt>-</tt></span>TTCGATATTGGATC 299
6904R-3.IR_full 301 AGCCGCTTGGAAGCTGGATCAGTTCAAATCGGAGATGTGGGAGAAGTGCCATATTGGAAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6904R-3.in silico 301 AGCCGCTTGGAAGCTGGATCAGTTCAAATCGGAGATGTGGGAGAAGTGCCATATTGGAAT 359
6904R-3.IR_full 361 ACCTCATTTGGATATCGAGACGAACGATGCCATTATCCTTGGCTTTATGATTGCCGAGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6904R-3.in silico 361 ACCTCATTTGGATATCGAGACGAACGATGCCATTATCCTTGGCTTTATGATTGCCGAGTT 419
6904R-3.IR_full 421 CCTGGAGGAGTTCCGCAACTTTGCCGTGACTTATTCGCAGAACAACGAATTGAGCGCTCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6904R-3.in silico 421 CCTGGAGGAGTTCCGCAACTTTGCCGTGACTTATTCGCAGAACAACGAATTGAGCGCTCC 479
6904R-3.IR_full 481 GAGGATTGTCGCCCACTTCCACGAATG 506
|||||||||||||||||||||||||||
6904R-3.in silico 481 GAGGATTGTCGCCCACTTCCACGAATG 506
</PRE>
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_169611.1 |
CG6904-RC, transcript variant C (CG6904), mRNA |
| 100 |
482 |
0 |
0 |
0 |
NM_142165.2 |
CG6904-RB, transcript variant B (CG6904), mRNA |
| 100 |
482 |
0 |
0 |
0 |
NM_169610.1 |
CG6904-RA, transcript variant A (CG6904), mRNA |
| 0 |
0 |
4 |
2 |
2 |
NM_079262.2 |
CG5008-RA (GNBP3), mRNA |
| 0 |
0 |
3 |
2 |
4 |
NM_079795.2 |
CG5499-RA (His2Av), mRNA |
| 0 |
0 |
2 |
4 |
6 |
NM_001042818.1 |
CG5055-RB, transcript variant B (baz), mRNA |
| 0 |
0 |
2 |
4 |
2 |
NM_078564.2 |
CG1594-RA (hop), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_001043153.1 |
CG32434-RC, transcript variant C (siz), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_206407.1 |
CG32434-RA, transcript variant A (siz), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_168881.1 |
CG32434-RB, transcript variant B (siz), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_165450.1 |
CG7882-RA, transcript variant A (CG7882), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_136345.1 |
CG7882-RB, transcript variant B (CG7882), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_135133.1 |
CG18340-RA, transcript variant A (Ucp4B), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_135256.2 |
CG4495-RA (CG4495), mRNA |
| 0 |
0 |
1 |
6 |
3 |
NM_132561.1 |
CG15733-RA (CG15733), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_141254.1 |
CG2022-RA (CG2022), mRNA |
| 0 |
0 |
1 |
5 |
3 |
NM_140151.2 |
CG11811-RA (CG11811), mRNA |
| 0 |
0 |
1 |
5 |
3 |
NM_170546.1 |
CG31005-RA (CG31005), mRNA |
| 0 |
0 |
1 |
4 |
6 |
NM_136652.2 |
CG1809-RA (CG1809), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_078974.2 |
CG7776-RA, transcript variant A (E(Pc)), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_165836.1 |
CG7776-RB, transcript variant B (E(Pc)), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_058149.3 |
CG3352-RA (ft), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_079826.2 |
CG7610-RA, transcript variant A (ATPsyn-gamma), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_170425.2 |
CG7610-RB, transcript variant B (ATPsyn-gamma), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_170426.1 |
CG7610-RC, transcript variant C (ATPsyn-gamma), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_079627.2 |
CG3351-RA (mRpL11), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_137795.1 |
CG6613-RA (CG6613), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_165493.1 |
CG15236-RB, transcript variant B (CG15236), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_136882.2 |
CG30040-RA (jeb), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_176688.1 |
CG3086-RD, transcript variant D (MAPk-Ak2), mRNA |
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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