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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
temporarily unavailable
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
6141R-1 |
| Symbol |
RpL9 |
Full Name |
Ribosomal protein L9 |
| CG No |
CG6141 |
Old CG No |
CG6141 |
| Synonyms |
L9, rpL9, unnamed, M(2)32D, anon-EST:fe3A6, CG6141, anon-WO0153538.27, anon-WO0153538.26, anon-WO0153538.25, RpL9, Rpl9 |
| Accession No (Link to NCBI) |
NM_057813.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Akai N, Igaki T, Ohsawa S.
Wingless signaling regulates winner/loser status in Minute cell competition.
Genes Cells (2018) 23(3) 234-240
[
PubMed ID = 29431244
]
[
RRC reference
]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet. (2019) 15(4) e1008121
[
PubMed ID = 31034473
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS ONE (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCCTAAGGATATCAAGGCCTCG |
| Primer Seq. 3' |
aatctagaggtaccACGTACAGACCGTCAAGGAAC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 CCTAAGGATA TCAAGGCCTC GGTGAAGGCC CGTGTGGTGA CCATCACCGG CACCCGCGGC
0061 ACCCTGAAGC GCAGCTTCAA GCACTTGGCT CTGGACATGT ACATGCCCGA CAAGCGCACC
0121 CTGAAGGTGG AGAAGTGGTT CGGAACCAAG AAGGAGTTGG CCGCCGTCCG CACCGTCTGC
0181 AGTCACATCG AGAACATGAT CAAGGGAGTC ACGTTTGGAT TCCAGTACAA GATGCGTGCT
0241 GTGTACGCCC ATTTCCCCAT CAACTGTGTC ACCTCCGAGA ACAACACGGT CATTGAGATC
0301 CGTAACTTCT TGGGTGAGAA GTACATCCGT CGTGTGGAGA TGGCTCCTGG CGTCACCGTG
0361 GTCAACTCCA CTGCCCAGAA GGACGAACTT ATCGTGGAGG GAAACGATAT TGAGTCTGTC
0421 TCCGGATCTG CCGCCCTCAT CCAGCAGTCC ACGACCGTCA AGAACAAGGA TATCCGTAAG
0481 TTCCTTGACG GTCTGTACGT |
| in silico PCR Fragment |
0001 CCTAAGGATA TCAAGGCCTC GGTGAAGGCC CGTGTGGTGA CCATCACCGG CACCCGCGGC
0061 ACCCTGAAGC GCAGCTTCAA GCACTTGGCT CTGGACATGT ACATGCCCGA CAAGCGCACC
0121 CTGAAGGTGG AGAAGTGGTT CGGAACCAAG AAGGAGTTGG CCGCCGTCCG CACCGTCTGC
0181 AGTCACATCG AGAACATGAT CAAGGGAGTC ACGTTTGGAT TCCAGTACAA GATGCGTGCT
0241 GTGTACGCCC ATTTCCCCAT CAACTGTGTC ACCTCCGAGA ACAACACGGT CATTGAGATC
0301 CGTAACTTCT TGGGTGAGAA GTACATCCGT CGTGTGGAGA TGGCTCCTGG CGTCACCGTG
0361 GTCAACTCCA CTGCCCAGAA GGACGAACTT ATCGTGGAGG GAAACGATAT TGAGTCTGTC
0421 TCCGGATCTG CCGCCCTCAT CCAGCAGTCC ACGACCGTCA AGAACAAGGA TATCCGTAAG
0481 TTCCTTGACG GTCTGTACGT |
| Assemble Data |
6141R-1.IR_full 1 CCTAAGGATATCAAGGCCTCGGTGAAGGCCCGTGTGGTGACCATCACCGGCACCCGCGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6141R-1.in silico 1 CCTAAGGATATCAAGGCCTCGGTGAAGGCCCGTGTGGTGACCATCACCGGCACCCGCGGC 60
6141R-1.IR_full 61 ACCCTGAAGCGCAGCTTCAAGCACTTGGCTCTGGACATGTACATGCCCGACAAGCGCACC 120
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6141R-1.in silico 61 ACCCTGAAGCGCAGCTTCAAGCACTTGGCTCTGGACATGTACATGCCCGACAAGCGCACC 120
6141R-1.IR_full 121 CTGAAGGTGGAGAAGTGGTTCGGAACCAAGAAGGAGTTGGCCGCCGTCCGCACCGTCTGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6141R-1.in silico 121 CTGAAGGTGGAGAAGTGGTTCGGAACCAAGAAGGAGTTGGCCGCCGTCCGCACCGTCTGC 180
6141R-1.IR_full 181 AGTCACATCGAGAACATGATCAAGGGAGTCACGTTTGGATTCCAGTACAAGATGCGTGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6141R-1.in silico 181 AGTCACATCGAGAACATGATCAAGGGAGTCACGTTTGGATTCCAGTACAAGATGCGTGCT 240
6141R-1.IR_full 241 GTGTACGCCCATTTCCCCATCAACTGTGTCACCTCCGAGAACAACACGGTCATTGAGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6141R-1.in silico 241 GTGTACGCCCATTTCCCCATCAACTGTGTCACCTCCGAGAACAACACGGTCATTGAGATC 300
6141R-1.IR_full 301 CGTAACTTCTTGGGTGAGAAGTACATCCGTCGTGTGGAGATGGCTCCTGGCGTCACCGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6141R-1.in silico 301 CGTAACTTCTTGGGTGAGAAGTACATCCGTCGTGTGGAGATGGCTCCTGGCGTCACCGTG 360
6141R-1.IR_full 361 GTCAACTCCACTGCCCAGAAGGACGAACTTATCGTGGAGGGAAACGATATTGAGTCTGTC 420
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6141R-1.in silico 361 GTCAACTCCACTGCCCAGAAGGACGAACTTATCGTGGAGGGAAACGATATTGAGTCTGTC 420
6141R-1.IR_full 421 TCCGGATCTGCCGCCCTCATCCAGCAGTCCACGACCGTCAAGAACAAGGATATCCGTAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6141R-1.in silico 421 TCCGGATCTGCCGCCCTCATCCAGCAGTCCACGACCGTCAAGAACAAGGATATCCGTAAG 480
6141R-1.IR_full 481 TTCCTTGACGGTCTGTACGT 500
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6141R-1.in silico 481 TTCCTTGACGGTCTGTACGT 500
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_057813.3 |
CG6141-RA, transcript variant A (RpL9), mRNA |
| 100 |
482 |
0 |
0 |
0 |
NM_164955.1 |
CG6141-RB, transcript variant B (RpL9), mRNA |
| 0.2 |
1 |
2 |
4 |
3 |
NM_140035.1 |
CG4484-RA (CG4484), mRNA |
| 0 |
0 |
3 |
6 |
3 |
NM_143796.2 |
CG12770-RA (Vps28), mRNA |
| 0 |
0 |
3 |
2 |
9 |
NM_079959.2 |
CG4501-RA (bgm), mRNA |
| 0 |
0 |
2 |
5 |
3 |
NM_078801.4 |
CG4405-RA, transcript variant A (jp), mRNA |
| 0 |
0 |
2 |
5 |
3 |
NM_164858.1 |
CG4405-RB, transcript variant B (jp), mRNA |
| 0 |
0 |
2 |
4 |
2 |
NM_137999.2 |
CG5602-RA (CG5602), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_137566.2 |
CG9834-RA, transcript variant A (endoB), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_166340.1 |
CG9834-RB, transcript variant B (endoB), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_079736.2 |
CG10868-RA, transcript variant A (orb), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_170062.1 |
CG10868-RB, transcript variant B (orb), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_170063.2 |
CG10868-RD, transcript variant D (orb), mRNA |
| 0 |
0 |
1 |
5 |
3 |
NM_137621.2 |
CG10444-RA (CG10444), mRNA |
| 0 |
0 |
1 |
3 |
8 |
NM_135328.1 |
CG7219-RA (CG7219), mRNA |
| 0 |
0 |
1 |
3 |
7 |
NM_137955.1 |
CG13556-RA (CG13556), mRNA |
| 0 |
0 |
1 |
3 |
7 |
NM_080765.2 |
CG13777-RC, transcript variant C (milt), mRNA |
| 0 |
0 |
1 |
3 |
7 |
NM_164736.1 |
CG13777-RA, transcript variant A (milt), mRNA |
| 0 |
0 |
1 |
3 |
7 |
NM_164738.1 |
CG13777-RB, transcript variant B (milt), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_140093.1 |
CG18178-RA (CG18178), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_079017.2 |
CG8542-RA (Hsc70-5), mRNA |
| 0 |
0 |
1 |
2 |
8 |
NM_079218.2 |
CG10491-RA, transcript variant A (vn), mRNA |
| 0 |
0 |
1 |
2 |
8 |
NM_001014565.1 |
CG10491-RB, transcript variant B (vn), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_079175.2 |
CG1242-RA (Hsp83), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_001043014.1 |
CG17800-PAL (Dscam), mRNA |
| 0 |
0 |
0 |
7 |
2 |
NM_170354.1 |
CG12428-RE, transcript variant E (CG12428), mRNA |
| 0 |
0 |
0 |
7 |
2 |
NM_170353.1 |
CG12428-RD, transcript variant D (CG12428), mRNA |
| 0 |
0 |
0 |
7 |
2 |
NM_170351.1 |
CG12428-RA, transcript variant A (CG12428), mRNA |
| 0 |
0 |
0 |
7 |
2 |
NM_143326.2 |
CG12428-RC, transcript variant C (CG12428), mRNA |
| 0 |
0 |
0 |
7 |
2 |
NM_170352.1 |
CG12428-RB, transcript variant B (CG12428), mRNA |
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