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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6013R-2 
 Symbol CG6013  Full Name CG6013 
 CG No CG6013  Old CG No CG6013 
 Synonyms CG6013 
 Accession No (Link to NCBI) NM_142520.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		Park J, Lee J, Kim JH, Lee J, Park H, Lim C.<br> ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.<br> Nucleic Acids Res (2021) 49(19) 11294-11311 [ PubMed ID = 34551427 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgCAGGAGAAGAAGAGCAAGGAG 
 Primer Seq. 3' 
aatctagaggtaccTGGGACATGCGAAGGGAAGGA 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 CNGGAGAAGA AGAGNCAGGA GGCGGAGGAT CGCCTGTGGC GCGATGACGA CAAGAATCTG 
0061 GCCAAGAAAC AACAGCGCAA GGACGAGGAG GAGCGCAAGC GGGCGGAGGC GGCCAAACGG 
0121 AAGGCTGAGG CCAAAGCGCT GCTTGACCAG GAAATGTCAT CCATCAACAC GCAGCGAAAN 
0181 GCAGCCGCTG GCCAAGATCA ACCGCCAGAT GATTCTCGAG GAGATGGAGA AGAAGCAGCG 
0241 CGTAATCGAG GCGATAAACG AGGCCAACAA GCCGATGGCC GCGCGAGTGG TGGTCCAAAA 
0301 CCATATCGAG GAGAATCTGA ACCGATCCAT GGCCGACACG GATGTGGCAT CCAACATTGA 
0361 CGAGGCCATC GTGGTGCTTA GTGTAAATGA CAGCGAAGAG GACAAGCATC CCGAGAAGcG 
0421 AATGCgNGCC GCCTACAAGA CCTTTGAAGC CAACAATCTG CCCCGCATTA AGGCTGAGAA 
0481 TCCTTCCCTT CGCATGTCCC A 
 in silico PCR Fragment 
0001 CAGGAGAAGA AGAGCAAGGA GGCGGAGGAT CGCCTGTGGC GCGATGACGA CAAGAATCTG 
0061 GCCAAGAAAC AACAGCGCAA GGACGAGGAG GAGCGCAAGC GGGCGGAGGC GGCCAAACGG 
0121 AAGGCTGAGG CCAAAGCGCT GCTTGACCAG GAAATGTCAT CCATTAACAC GCAGCGAAA- 
0181 GCAGCCGCTG GCCAAGATCA ACCGCCAGAT GATTCTCGAG GAGATGGAGA AGAAGCAGCG 
0241 CGTAATCGAG GCGATAAACG AGGCCAACAA GCCGATGGCC GCGCGAGTGG TGGTCCAAAA 
0301 CCATATCGAG GAGAATCTGA ACCGATCCAT GGCCGACACG GATGTGGCAT CCAACATTGA 
0361 CGAGGCCATC GTGGTGCTCA GTGTAAATGA CAGCGAAGAG GACAAGCATC CCGAGAAGCG 
0421 AATGCGCGCC GCCTACAAGA CCTTTGAAGC CAACAATCTG CCCCGCATTA AGGCTGAGAA 
0481 TCCTTCCCTT CGCATGTCCC A 
 Assemble Data 
<PRE>

6013R-2.IR_full       1   C<span class="snp"><tt>N</tt></span>GGAGAAGAAGAG<span class="snp"><tt>N</tt></span><span class="snp"><tt>C</tt></span>AGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCTG 60
                          |<span class="snp"><tt>&nbsp;</tt></span>||||||||||||<span class="snp"><tt>&nbsp;</tt></span><span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||||||||||||
6013R-2.in silico     1   C<span class="snp"><tt>A</tt></span>GGAGAAGAAGAG<span class="snp"><tt>C</tt></span><span class="snp"><tt>A</tt></span>AGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCTG 60


6013R-2.IR_full       61  GCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGGCGGCCAAACGG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6013R-2.in silico     61  GCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGGCGGCCAAACGG 120


6013R-2.IR_full       121 AAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCATCCAT<span class="snp"><tt>C</tt></span>AACACGCAGCGAAA<span class="snp"><tt>N</tt></span> 180
                          ||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>
6013R-2.in silico     121 AAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCATCCAT<span class="snp"><tt>T</tt></span>AACACGCAGCGAAA<span class="snp"><tt>-</tt></span> 180


6013R-2.IR_full       181 GCAGCCGCTGGCCAAGATCAACCGCCAGATGATTCTCGAGGAGATGGAGAAGAAGCAGCG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6013R-2.in silico     181 GCAGCCGCTGGCCAAGATCAACCGCCAGATGATTCTCGAGGAGATGGAGAAGAAGCAGCG 240


6013R-2.IR_full       241 CGTAATCGAGGCGATAAACGAGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6013R-2.in silico     241 CGTAATCGAGGCGATAAACGAGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAA 300


6013R-2.IR_full       301 CCATATCGAGGAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6013R-2.in silico     301 CCATATCGAGGAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA 360


6013R-2.IR_full       361 CGAGGCCATCGTGGTGCT<span class="snp"><tt>T</tt></span>AGTGTAAATGACAGCGAAGAGGACAAGCATCCCGAGAAGCG 420
                          ||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||||||||
6013R-2.in silico     361 CGAGGCCATCGTGGTGCT<span class="snp"><tt>C</tt></span>AGTGTAAATGACAGCGAAGAGGACAAGCATCCCGAGAAGCG 420


6013R-2.IR_full       421 AATGCG<span class="snp"><tt>N</tt></span>GCCGCCTACAAGACCTTTGAAGCCAACAATCTGCCCCGCATTAAGGCTGAGAA 480
                          ||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||
6013R-2.in silico     421 AATGCG<span class="snp"><tt>C</tt></span>GCCGCCTACAAGACCTTTGAAGCCAACAATCTGCCCCGCATTAAGGCTGAGAA 480


6013R-2.IR_full       481 TCCTTCCCTTCGCATGTCCCA 501
                          |||||||||||||||||||||
6013R-2.in silico     481 TCCTTCCCTTCGCATGTCCCA 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch 		 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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