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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4901R-3 
 Symbol CG4901  Full Name CG4901 
 CG No CG4901  Old CG No CG4901 
 Synonyms cg4901, CG4901 
 Accession No (Link to NCBI) NM_135512.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		Park J, Lee J, Kim JH, Lee J, Park H, Lim C.<br> ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.<br> Nucleic Acids Res (2021) 49(19) 11294-11311 [ PubMed ID = 34551427 ] [ RRC reference ]

Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.<br> Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.<br> PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGAAGTACGATGCCATGGCGAA 
 Primer Seq. 3' 
aatctagaggtaccCGTGAGCCTCGTCCAGAATAA 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 GAAGTACGAT GCCATGGCGA ACAGTCCCAT ACTGGAGAAG AAACCCCATG TGGCCCAAAT 
0061 CAAGCAGACA ATAGCTCCCA TTCTGCTGAC CAGCAAAAGA ACCTCCATTG AACAGCAGCA 
0121 AAAATCACTG CCTGTCTTTA ATTGCCGCCA TCGAATCCTC AAGGAACTGG AAGCGAACGA 
0181 CACCGTGCTA ATCATGAGCG AGACGGGCTC GGGCAAGACC ACACAGATAC CACAGTTCCT 
0241 GCTGCTGGCT GGTTACGCCA AGAACGGAAT GATCGGAATC ACCCAGCCGC GCAGAGTGGC 
0301 GGCCATAACA GTGGCACGTC GCGTGGCCCA GGAGTTGAAC GGAACCATTG GCGACACGGT 
0361 GGGCTATACG GTGCGTTTCG AGGATGTCAC CTCAAGGGCC ACAAAGATTC GATTCCTTAC 
0421 CGACGGCGTT TTGCTGCGCG AGTCCATTAA GGATCGACTA CTGCTCAAAT ATTCTGTGAT 
0481 TATTCTGGAC GAGGCTCACG  
 in silico PCR Fragment 
0001 GAAGTACGAT GCCATGGCGA ACAGTCCCAT ACTGGAGAAG AAACCCCATG TGGCCCAAAT 
0061 CAAGCAGACA ATAGCTCCCA TTCTGCTGAC CAGCAAAAGA ACCTCCATTG AACAGCAGCA 
0121 AAAATCACTG CCTGTCTTTA ATTGCCGCCA TCGAATCCTC AAGGAACTGG AAGCGAACGA 
0181 CACCGTGCTA ATCATGAGCG AGACGGGCTC GGGCAAGACC ACACAGATAC CACAGTTCCT 
0241 GCTGCTGGCT GGTTACGCCA AGAACGGAAT GATCGGAATC ACCCAGCCGC GCAGAGTGGC 
0301 GGCCATAACA GTGGCACGTC GCGTGGCCCA GGAGTTGAAC GGAACCATTG GCGACACGGT 
0361 GGGCTATACG GTGCGTTTCG AGGATGTCAC CTCAAGGGCC ACAAAGATTC GATTCCTTAC 
0421 CGACGGCGTT TTGCTGCGCG AGTCCATTAA GGATCGACTA CTGCTCAAAT ATTCTGTGAT 
0481 TATTCTGGAC GAGGCTCACG  
 Assemble Data 
<PRE>

4901R-3.IR_full       1   GAAGTACGATGCCATGGCGAACAGTCCCATACTGGAGAAGAAACCCCATGTGGCCCAAAT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4901R-3.in silico     1   GAAGTACGATGCCATGGCGAACAGTCCCATACTGGAGAAGAAACCCCATGTGGCCCAAAT 60


4901R-3.IR_full       61  CAAGCAGACAATAGCTCCCATTCTGCTGACCAGCAAAAGAACCTCCATTGAACAGCAGCA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4901R-3.in silico     61  CAAGCAGACAATAGCTCCCATTCTGCTGACCAGCAAAAGAACCTCCATTGAACAGCAGCA 120


4901R-3.IR_full       121 AAAATCACTGCCTGTCTTTAATTGCCGCCATCGAATCCTCAAGGAACTGGAAGCGAACGA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4901R-3.in silico     121 AAAATCACTGCCTGTCTTTAATTGCCGCCATCGAATCCTCAAGGAACTGGAAGCGAACGA 180


4901R-3.IR_full       181 CACCGTGCTAATCATGAGCGAGACGGGCTCGGGCAAGACCACACAGATACCACAGTTCCT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4901R-3.in silico     181 CACCGTGCTAATCATGAGCGAGACGGGCTCGGGCAAGACCACACAGATACCACAGTTCCT 240


4901R-3.IR_full       241 GCTGCTGGCTGGTTACGCCAAGAACGGAATGATCGGAATCACCCAGCCGCGCAGAGTGGC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4901R-3.in silico     241 GCTGCTGGCTGGTTACGCCAAGAACGGAATGATCGGAATCACCCAGCCGCGCAGAGTGGC 300


4901R-3.IR_full       301 GGCCATAACAGTGGCACGTCGCGTGGCCCAGGAGTTGAACGGAACCATTGGCGACACGGT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4901R-3.in silico     301 GGCCATAACAGTGGCACGTCGCGTGGCCCAGGAGTTGAACGGAACCATTGGCGACACGGT 360


4901R-3.IR_full       361 GGGCTATACGGTGCGTTTCGAGGATGTCACCTCAAGGGCCACAAAGATTCGATTCCTTAC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4901R-3.in silico     361 GGGCTATACGGTGCGTTTCGAGGATGTCACCTCAAGGGCCACAAAGATTCGATTCCTTAC 420


4901R-3.IR_full       421 CGACGGCGTTTTGCTGCGCGAGTCCATTAAGGATCGACTACTGCTCAAATATTCTGTGAT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4901R-3.in silico     421 CGACGGCGTTTTGCTGCGCGAGTCCATTAAGGATCGACTACTGCTCAAATATTCTGTGAT 480


4901R-3.IR_full       481 TATTCTGGACGAGGCTCACG 500
                          ||||||||||||||||||||
4901R-3.in silico     481 TATTCTGGACGAGGCTCACG 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_135512.2  CG4901-RA (CG4901), mRNA 
0.41   2  3  2  2  NM_057579.3  CG12759-RA (Dbp45A), mRNA 
0   0  2  3  5  NM_170542.1  CG18729-RA (zwilch), mRNA 
0   0  2  2  2  NM_176749.1  CG8611-RB, transcript variant B (CG8611), mRNA 
0   0  2  2  2  NM_132986.4  CG8611-RA, transcript variant A (CG8611), mRNA 
0   0  1  4  4  NM_134474.4  CG32532-RA (CG32532), mRNA 
0   0  1  3  6  NM_137768.1  CG13492-RA, transcript variant A (CG13492), mRNA 
0   0  1  3  6  NM_166487.2  CG13492-RB, transcript variant B (CG13492), mRNA 
0   0  1  3  3  NM_057469.3  CG10718-RA (neb), mRNA 
0   0  1  3  3  NM_142291.2  CG14896-RA (CG14896), mRNA 
0   0  1  3  3  NM_138184.4  CG32344-RA (CG32344), mRNA 
0   0  1  3  2  NM_057620.4  CG9073-RA (TpnC47D), mRNA 
0   0  1  2  4  NM_137032.2  CG5970-RA (CG5970), mRNA 
0   0  1  2  3  NM_137905.2  CG30194-RB, transcript variant B (CG30194), mRNA 
0   0  1  2  3  NM_206203.1  CG30194-RC, transcript variant C (CG30194), mRNA 
0   0  1  2  3  NM_206204.1  CG30194-RD, transcript variant D (CG30194), mRNA 
0   0  0  5  7  NM_143769.3  CG9432-RA, transcript variant A (l(2)01289), mRNA 
0   0  0  5  5  NM_001043216.1  CG34113-RO, transcript variant O (CG34113), mRNA 
0   0  0  5  3  NM_134727.2  CG4577-RA (CG4577), mRNA 
0   0  0  4  18  NM_136425.2  CG11107-RA (CG11107), mRNA 
0   0  0  4  5  NM_136052.2  CG10383-RA (CG10383), mRNA 
0   0  0  4  4  NM_080139.3  CG8171-RA (dup), mRNA 
0   0  0  4  3  NM_169782.1  CG31243-RA, transcript variant A (cpo), mRNA 
0   0  0  4  3  NM_137296.2  CG8306-RA (CG8306), mRNA 
0   0  0  4  3  NM_080105.2  CG31243-RF, transcript variant F (cpo), mRNA 
0   0  0  4  3  NM_169781.1  CG31243-RE, transcript variant E (cpo), mRNA 
0   0  0  4  3  NM_001014632.1  CG31243-RG, transcript variant G (cpo), mRNA 
0   0  0  4  3  NM_169783.1  CG31243-RB, transcript variant B (cpo), mRNA 
0   0  0  4  3  NM_001014631.1  CG31243-RH, transcript variant H (cpo), mRNA 
0   0  0  4  3  NM_140344.1  CG10967-RA (Atg1), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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