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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
4032R-2 |
| Symbol |
Abl |
Full Name |
Abl tyrosine kinase |
| CG No |
CG4032 |
Old CG No |
CG4032 |
| Synonyms |
D-abl, abl, Ableson, AblK, CG4032, DROTKABL3, ABL, Ddash/abl, DAbl, c-abl, 4674, Dash, Am ABL, Dabl, l(3)04674, cAbl, D-ash, l(3)c-abl, l(3)73Ba, abl1, Dsrc7, C-abl, Abl1, Abl, Abl tyrosine kinase, Abl oncogene, Abelson Kinase, Abelson, abelson, D-abelson, abl kinase |
| Accession No (Link to NCBI) |
NM_080104.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
larval lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Fairchild MJ, Islam F, Tanentzapf G.<br> Identification of genetic networks that act in the somatic cells of the testis to mediate the developmental program of spermatogenesis.<br> PLoS Genet (2017) 13(9) e1007026
[
PubMed ID = 28957323
]
[
RRC reference
]
Hosono C, Matsuda R, Adryan B, Samakovlis C.<br> Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes.<br> Nat Cell Biol (2015) 17(12) 1569-76
[
PubMed ID = 26551273
]
[
RRC reference
]
Perkins AD, Lee MJ, Tanentzapf G.<br> The systematic identification of cytoskeletal genes required for Drosophila melanogaster muscle maintenance.<br> Sci Data (2014) 1 140002
[
PubMed ID = 25977760
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAATGGCAGTTTCCTGGTCCGT |
| Primer Seq. 3' |
aatctagaggtaccGGTGGTTCTCTGGTGCAAACA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 AATGGCAGTT TCCTGGTCCG TGAAAGTGAA AGTTCACCGG GTNCAAAGGA GCATCAGTTT
0061 GAGATACGAG GGTCGCGTCT ATCACTACCG CATCTCAGAG GATCCCGATG GGAAAGTCTT
0121 CGTTACCCAG GAGGCCAAGT TTAACACTCT GGCCGAGCTG GTGCATCATC ACAGCGTGCC
0181 CCATGAGGGT CACGGCCTGA TCACACCGCT CCTATATCCG GCGCCCAAGC AGAACAAGCC
0241 CACCGTCTTT CCGCTGAGTC CCGAGCCGGA TGAGTGGGAG ATCTGCCGGA CGGACATCAT
0301 GATGAAGCAC AAGCTAGGCG GCGGTCAGTA CGGAGAGGTC TACGAGGCCG TTTGGAAGCG
0361 GTATGGCAAT ACGGTGGCTG TTAAAACGCT CAAGGAGGAC ACCATGGCAC TGAAGGACTT
0421 CCTCGAAGAG GCGGCCATCA TGAAGGAAAT GAAgNACCCT AATCTGGTGC AGCTCATTGG
0481 TGTTTGCACC AGAGAACCAC C |
| in silico PCR Fragment |
0001 AATGGCAGTT TCCTGGTCCG TGAAAGTGAA AGTTCACCGG GT-CAAAGGA GCATCAGTTT
0061 GAGATACGAG GGTCGCGTCT ATCACTACCG CATCTCAGAG GATCCCGATG GGAAAGTCTT
0121 CGTTACCCAG GAGGCCAAGT TTAACACTCT GGCCGAGCTG GTGCATCATC ACAGCGTGCC
0181 CCATGAGGGT CACGGCCTGA TCACACCGCT CCTATATCCG GCGCCCAAGC AGAACAAGCC
0241 CACCGTCTTT CCGCTGAGTC CCGAGCCGGA TGAGTGGGAG ATCTGCCGGA CGGACATCAT
0301 GATGAAGCAC AAGCTAGGCG GCGGTCAGTA CGGAGAGGTC TACGAGGCCG TTTGGAAGCG
0361 GTATGGCAAT ACGGTGGCTG TTAAAACGCT CAAGGAGGAC ACCATGGCAC TGAAGGACTT
0421 CCTCGAAGAG GCGGCCATCA TGAAGGAAAT GAAGCACCCT AATCTGGTGC AGCTCATTGG
0481 TGTTTGCACC AGAGAACCAC C |
| Assemble Data |
<PRE>
4032R-2.IR_full 1 AATGGCAGTTTCCTGGTCCGTGAAAGTGAAAGTTCACCGGGT<span class="snp"><tt>N</tt></span>CAAAGGAGCATCAGTTT 60
||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||
4032R-2.in silico 1 AATGGCAGTTTCCTGGTCCGTGAAAGTGAAAGTTCACCGGGT<span class="snp"><tt>-</tt></span>CAAAGGAGCATCAGTTT 60
4032R-2.IR_full 61 GAGATACGAGGGTCGCGTCTATCACTACCGCATCTCAGAGGATCCCGATGGGAAAGTCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4032R-2.in silico 61 GAGATACGAGGGTCGCGTCTATCACTACCGCATCTCAGAGGATCCCGATGGGAAAGTCTT 120
4032R-2.IR_full 121 CGTTACCCAGGAGGCCAAGTTTAACACTCTGGCCGAGCTGGTGCATCATCACAGCGTGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4032R-2.in silico 121 CGTTACCCAGGAGGCCAAGTTTAACACTCTGGCCGAGCTGGTGCATCATCACAGCGTGCC 180
4032R-2.IR_full 181 CCATGAGGGTCACGGCCTGATCACACCGCTCCTATATCCGGCGCCCAAGCAGAACAAGCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4032R-2.in silico 181 CCATGAGGGTCACGGCCTGATCACACCGCTCCTATATCCGGCGCCCAAGCAGAACAAGCC 240
4032R-2.IR_full 241 CACCGTCTTTCCGCTGAGTCCCGAGCCGGATGAGTGGGAGATCTGCCGGACGGACATCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4032R-2.in silico 241 CACCGTCTTTCCGCTGAGTCCCGAGCCGGATGAGTGGGAGATCTGCCGGACGGACATCAT 300
4032R-2.IR_full 301 GATGAAGCACAAGCTAGGCGGCGGTCAGTACGGAGAGGTCTACGAGGCCGTTTGGAAGCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4032R-2.in silico 301 GATGAAGCACAAGCTAGGCGGCGGTCAGTACGGAGAGGTCTACGAGGCCGTTTGGAAGCG 360
4032R-2.IR_full 361 GTATGGCAATACGGTGGCTGTTAAAACGCTCAAGGAGGACACCATGGCACTGAAGGACTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4032R-2.in silico 361 GTATGGCAATACGGTGGCTGTTAAAACGCTCAAGGAGGACACCATGGCACTGAAGGACTT 420
4032R-2.IR_full 421 CCTCGAAGAGGCGGCCATCATGAAGGAAATGAAG<span class="snp"><tt>N</tt></span>ACCCTAATCTGGTGCAGCTCATTGG 480
||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||
4032R-2.in silico 421 CCTCGAAGAGGCGGCCATCATGAAGGAAATGAAG<span class="snp"><tt>C</tt></span>ACCCTAATCTGGTGCAGCTCATTGG 480
4032R-2.IR_full 481 TGTTTGCACCAGAGAACCACC 501
|||||||||||||||||||||
4032R-2.in silico 481 TGTTTGCACCAGAGAACCACC 501
</PRE>
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
5 |
NM_080104.2 |
CG4032-RA (Abl), mRNA |
| 0 |
0 |
3 |
4 |
3 |
NM_167572.1 |
CG32555-RA, transcript variant A (RhoGAPp190), mRNA |
| 0 |
0 |
3 |
4 |
3 |
NM_167573.1 |
CG32555-RC, transcript variant C (RhoGAPp190), mRNA |
| 0 |
0 |
3 |
4 |
3 |
NM_133003.2 |
CG32555-RB, transcript variant B (RhoGAPp190), mRNA |
| 0 |
0 |
3 |
4 |
2 |
NM_001015081.1 |
CG40477-PA.3 (CG40477), partial mRNA |
| 0 |
0 |
3 |
4 |
2 |
NM_001031860.1 |
CG33653-RA, transcript variant A (Caps), mRNA |
| 0 |
0 |
3 |
4 |
2 |
NM_001031858.1 |
CG33653-RC, transcript variant C (Caps), mRNA |
| 0 |
0 |
3 |
4 |
2 |
NM_001031859.1 |
CG33653-RB, transcript variant B (Caps), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_132517.1 |
CG15221-RA (CG15221), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_057374.2 |
CG3722-RA (shg), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_131932.2 |
CG2982-RB, transcript variant B (CG2982), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_167007.1 |
CG2982-RA, transcript variant A (CG2982), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_135945.2 |
CG5861-RA (CG5861), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_142461.2 |
CG14309-RA (CG14309), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_130667.2 |
CG2685-RA (CG2685), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_169023.1 |
CG31536-RB, transcript variant B (Cdep), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_001043211.1 |
CG31536-RE, transcript variant E (Cdep), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_169022.1 |
CG31536-RA, transcript variant A (Cdep), mRNA |
| 0 |
0 |
1 |
2 |
9 |
NM_140897.2 |
CG8103-RA, transcript variant A (Mi-2), mRNA |
| 0 |
0 |
1 |
2 |
9 |
NM_001014591.1 |
CG8103-RB, transcript variant B (Mi-2), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_139602.2 |
CG14992-RA (Ack), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_169521.1 |
CG8863-RD, transcript variant D (CG8863), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_169520.1 |
CG8863-RC, transcript variant C (CG8863), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_142026.2 |
CG8863-RA, transcript variant A (CG8863), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_169522.1 |
CG8863-RE, transcript variant E (CG8863), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_169519.1 |
CG8863-RB, transcript variant B (CG8863), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_135225.1 |
CG11323-RA (CG11323), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_136614.4 |
CG18659-RB, transcript variant B (CG18659), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_145873.2 |
CG18659-RA, transcript variant A (CG18659), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_140392.1 |
CG14109-RA (CG14109), mRNA |
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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