| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
3772R-3 |
| Symbol |
cry |
Full Name |
cryptochrome |
| CG No |
CG3772 |
Old CG No |
CG3772 |
| Synonyms |
Cry, CRY, dCRY, dCry, DCry, dcry, DmCRY1, Dm-CRY1, cryb, anon-WO0172774.15, CG3772, anon-WO0140519.20, anon-WO0140519.19, anon-WO0140519.17, cry |
| Accession No (Link to NCBI) |
NM_169852.1 |
| Inserted Chr. |
ll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Inami S, Sakai T.<br> Circadian photoreceptors are required for light-dependent maintenance of long-term memory in Drosophila.<br> Neurosci Res (2022) 185 62-66
[
PubMed ID = 36096270
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgATGTGGGTTACAATCGGATGC |
| Primer Seq. 3' |
aatctagaggtaccGAAGCCCATGTTGTCTCCATA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 ATGTGGGTTA CAATCGGATG CGTTTCCTCC TGGACTCGTT GCAGGACATC GATGATCAGC
0061 TACAGGCGGC AACTGATGGA CGTGGACGCC TCCTGGTCTT CGAGGGCGAA CCGGCTTATA
0121 TCTTCCGCCG GCTACATGAG CAAGTGCGTC TGCACAGGAT TTGCATAGAG CAGGACTGCG
0181 AGCCAATTTG GAATGAGCGC GATGAAAGCA TCCGTTCTCT ATGTCGGGAG CTGAATATCG
0241 ACTTTGTCGA GAAGGTATCA CACACGCTAT GGGATCCGCA ATTGGTGATT GAGACCAATG
0301 GTGGCATTCC ACCGCTGACC TACCAAATGT TNCTGNACAC GGTGCAAATT ATTGGGCTTC
0361 CACCGCGTCC CANCNGCCGA TGCTCGACTA GAAGACGCCA CCTTTGTCGA GCTGGACCCC
0421 GAGTTCTGCC GAAGTCTTAA GTTGTTCGAG CAGCTGCCCA CNCCGGAGCA CTTCAATGTG
0481 TATGGAGACA ACATGGGCTT C |
| in silico PCR Fragment |
0001 ATGTGGGTTA CAATCGGATG CGTTTCCTCC TGGACTCGTT GCAGGACATC GATGATCAGC
0061 TACAGGCGGC AACTGATGGA CGTGGACGCC TCCTGGTCTT CGAGGGCGAA CCGGCTTATA
0121 TCTTCCGCCG GCTACATGAG CAAGTGCGTC TGCACAGGAT TTGCATAGAG CAGGACTGCG
0181 AGCCAATTTG GAATGAGCGC GATGAAAGCA TCCGTTCTCT ATGTCGGGAG CTGAATATCG
0241 ACTTTGTCGA GAAGGTATCA CACACGCTTT GGGATCCGCA ATTGGTGATT GAGACCAATG
0301 GTGGCATTCC ACCGCTGACC TACCAAATGT TCCTGCACAC GGTGCAAATT ATTGGGCTTC
0361 CACCGCGTCC CA-CCGCCGA TGCTCGACTA GAAGACGCCA CCTTTGTCGA GCTGGACCCC
0421 GAGTTCTGCC GAAGTCTTAA GTTGTTCGAG CAGCTGCCCA CGCCGGAGCA CTTCAATGTG
0481 TATGGAGACA ACATGGGCTT C |
| Assemble Data |
<PRE>
3772R-3.IR_full 1 ATGTGGGTTACAATCGGATGCGTTTCCTCCTGGACTCGTTGCAGGACATCGATGATCAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3772R-3.in silico 1 ATGTGGGTTACAATCGGATGCGTTTCCTCCTGGACTCGTTGCAGGACATCGATGATCAGC 60
3772R-3.IR_full 61 TACAGGCGGCAACTGATGGACGTGGACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3772R-3.in silico 61 TACAGGCGGCAACTGATGGACGTGGACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATA 120
3772R-3.IR_full 121 TCTTCCGCCGGCTACATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3772R-3.in silico 121 TCTTCCGCCGGCTACATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCG 180
3772R-3.IR_full 181 AGCCAATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTGAATATCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3772R-3.in silico 181 AGCCAATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTGAATATCG 240
3772R-3.IR_full 241 ACTTTGTCGAGAAGGTATCACACACGCT<span class="snp"><tt>A</tt></span>TGGGATCCGCAATTGGTGATTGAGACCAATG 300
||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||
3772R-3.in silico 241 ACTTTGTCGAGAAGGTATCACACACGCT<span class="snp"><tt>T</tt></span>TGGGATCCGCAATTGGTGATTGAGACCAATG 300
3772R-3.IR_full 301 GTGGCATTCCACCGCTGACCTACCAAATGTT<span class="snp"><tt>N</tt></span>CTG<span class="snp"><tt>N</tt></span>ACACGGTGCAAATTATTGGGCTTC 360
|||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||
3772R-3.in silico 301 GTGGCATTCCACCGCTGACCTACCAAATGTT<span class="snp"><tt>C</tt></span>CTG<span class="snp"><tt>C</tt></span>ACACGGTGCAAATTATTGGGCTTC 360
3772R-3.IR_full 361 CACCGCGTCCCA<span class="snp"><tt>N</tt></span>C<span class="snp"><tt>N</tt></span>GCCGATGCTCGACTAGAAGACGCCACCTTTGTCGAGCTGGACCCC 420
||||||||||||<span class="snp"><tt> </tt></span>|<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||||||
3772R-3.in silico 361 CACCGCGTCCCA<span class="snp"><tt>-</tt></span>C<span class="snp"><tt>C</tt></span>GCCGATGCTCGACTAGAAGACGCCACCTTTGTCGAGCTGGACCCC 420
3772R-3.IR_full 421 GAGTTCTGCCGAAGTCTTAAGTTGTTCGAGCAGCTGCCCAC<span class="snp"><tt>N</tt></span>CCGGAGCACTTCAATGTG 480
|||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||
3772R-3.in silico 421 GAGTTCTGCCGAAGTCTTAAGTTGTTCGAGCAGCTGCCCAC<span class="snp"><tt>G</tt></span>CCGGAGCACTTCAATGTG 480
3772R-3.IR_full 481 TATGGAGACAACATGGGCTTC 501
|||||||||||||||||||||
3772R-3.in silico 481 TATGGAGACAACATGGGCTTC 501
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
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