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Notice:
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Suspension of shipments during Golden Week Holidays: From 4 May to 11 May, deadline 21 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
31872R-2 |
| Symbol |
CG31872 |
Full Name |
CG31872 |
| CG No |
CG31872 |
Old CG No |
CG31872 |
| Synonyms |
CG17101, CG17093, CG31872 |
| Accession No (Link to NCBI) |
NM_164937.1 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
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Reference
[Please submit your publication]
|
Ito S, Ueda T, Ueno A, Nakagawa H, Taniguchi H, Kayukawa N, Miki T.
A genetic screen in Drosophila for regulators of human prostate cancer progression.
Biochem Biophys Res Commun (2014) 451(4) 548-55
[
PubMed ID = 25117438
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAATCGTTTAGCCGAGGGCTTG |
| Primer Seq. 3' |
aatctagaggtaccTTGATCCTGCGATTGGGATTG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 AATCGTTTAG CCGAgGGCTT GAAGAAGCNA agcNTCAAAT CCAAAAGCAA TCTCAATCAC
0061 AATCGCAGGC TCAAGGTCTA GGTCAATCAC AGCAACAAAT CCAATACGCG AATATAGCCA
0121 GAACTAAAGT CCAAAAACAA TTCCAATCGC AAGAACTAGG ACTGGCTCAA TCGCAGCAAC
0181 AGACCCAGAT TCAACAATCA CTGAATCAAG ATGGAGCTAA ATTACGAGAA AAACCTTATC
0241 CGCATATTCA AACTTCATCA CAAAGAAACG CCGATGATCC AGAAAGTGAA GAATCTGAAG
0301 CACCAGGAGG ACTGTCGGGA AAAATAGCTT TAGTACCACC AAATGAAGAG GGAGATCAAA
0361 AGCAAGACCA GGCTCAATCA CAGATTGAAG ATGAAGCTGA AGTTCTTAGA CAAGGTCTGG
0421 CGCAAACGGA ATCTCAAATT CAGAATCAAA GACAAGGACT GGAAAAGGAG ATACAAGGGC
0481 AATCCCAATC GCAGGATCAA |
| in silico PCR Fragment |
0001 AATCGTTTAG CCGAGGGCTT GAAGAAGCGA AGCTTCAAAT CCAAAAGCAA TCTCAATCAC
0061 AATCGCAGGC TCAAGGTCTA GGTCAATCAC AGCAACAAAT CCAATACGCG AATATAGCCA
0121 GAACTAAAGT CCAAAAACAA TTCCAATCGC AACAACTAGG ACTGGCTCAA TCGCAGCAAC
0181 AGACCCAGAT TCAACAATCA CTGAATCAAG ATGGAGCTAA ATTACGAGAA AAACCTTATC
0241 CGCATATTCA AACTTCATCA CAAAGAAACG CCGATGATCC AGAAAGTGAA GAAGCTGAAG
0301 CACCAGGAGG ACTGTCGGGA AAAATAGCTT TAGTACCACC AAATGAAGAG GGAGATCAAA
0361 AGCAAGACCA GGCTCAATCA CAGATTGAAG ATGAAGCTGA AGTTCTTAGA CAAGGTCTGG
0421 CGCAAACGGA ATCTCAAATT CAGAATCAAA GACAAGGACT GGAAAAGGAG ATACAAGGGC
0481 AATCCCAATC GCAGGATCAA |
| Assemble Data |
31872R-2.IR_full 1 AATCGTTTAGCCGAGGGCTTGAAGAAGCNAAGCNTCAAATCCAAAAGCAATCTCAATCAC 60
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
31872R-2.in silico 1 AATCGTTTAGCCGAGGGCTTGAAGAAGCGAAGCTTCAAATCCAAAAGCAATCTCAATCAC 60
31872R-2.IR_full 61 AATCGCAGGCTCAAGGTCTAGGTCAATCACAGCAACAAATCCAATACGCGAATATAGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31872R-2.in silico 61 AATCGCAGGCTCAAGGTCTAGGTCAATCACAGCAACAAATCCAATACGCGAATATAGCCA 120
31872R-2.IR_full 121 GAACTAAAGTCCAAAAACAATTCCAATCGCAAGAACTAGGACTGGCTCAATCGCAGCAAC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
31872R-2.in silico 121 GAACTAAAGTCCAAAAACAATTCCAATCGCAACAACTAGGACTGGCTCAATCGCAGCAAC 180
31872R-2.IR_full 181 AGACCCAGATTCAACAATCACTGAATCAAGATGGAGCTAAATTACGAGAAAAACCTTATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31872R-2.in silico 181 AGACCCAGATTCAACAATCACTGAATCAAGATGGAGCTAAATTACGAGAAAAACCTTATC 240
31872R-2.IR_full 241 CGCATATTCAAACTTCATCACAAAGAAACGCCGATGATCCAGAAAGTGAAGAATCTGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
31872R-2.in silico 241 CGCATATTCAAACTTCATCACAAAGAAACGCCGATGATCCAGAAAGTGAAGAAGCTGAAG 300
31872R-2.IR_full 301 CACCAGGAGGACTGTCGGGAAAAATAGCTTTAGTACCACCAAATGAAGAGGGAGATCAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31872R-2.in silico 301 CACCAGGAGGACTGTCGGGAAAAATAGCTTTAGTACCACCAAATGAAGAGGGAGATCAAA 360
31872R-2.IR_full 361 AGCAAGACCAGGCTCAATCACAGATTGAAGATGAAGCTGAAGTTCTTAGACAAGGTCTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31872R-2.in silico 361 AGCAAGACCAGGCTCAATCACAGATTGAAGATGAAGCTGAAGTTCTTAGACAAGGTCTGG 420
31872R-2.IR_full 421 CGCAAACGGAATCTCAAATTCAGAATCAAAGACAAGGACTGGAAAAGGAGATACAAGGGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31872R-2.in silico 421 CGCAAACGGAATCTCAAATTCAGAATCAAAGACAAGGACTGGAAAAGGAGATACAAGGGC 480
31872R-2.IR_full 481 AATCCCAATCGCAGGATCAA 500
||||||||||||||||||||
31872R-2.in silico 481 AATCCCAATCGCAGGATCAA 500
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
3 |
18 |
98 |
NM_164937.1 |
CG31872-RA (CG31872), mRNA |
| 0.2 |
1 |
2 |
4 |
4 |
NM_140674.2 |
CG11915-RA (CG11915), mRNA |
| 0 |
0 |
3 |
2 |
4 |
NM_165176.2 |
CG31782-RB, transcript variant B (CG31782), mRNA |
| 0 |
0 |
3 |
2 |
4 |
NM_165175.1 |
CG31782-RA, transcript variant A (CG31782), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_079088.2 |
CG9952-RA (ppa), mRNA |
| 0 |
0 |
1 |
4 |
6 |
NM_206153.1 |
CG33130-RC, transcript variant C (l(2)k07433), mRNA |
| 0 |
0 |
1 |
4 |
6 |
NM_176218.1 |
CG33130-RA, transcript variant A (l(2)k07433), mRNA |
| 0 |
0 |
1 |
4 |
6 |
NM_206154.1 |
CG33130-RB, transcript variant B (l(2)k07433), mRNA |
| 0 |
0 |
1 |
3 |
9 |
NM_169845.1 |
CG31043-RA, transcript variant A (gukh), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_001032021.1 |
CG31043-RC, transcript variant C (gukh), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_169846.1 |
CG31043-RB, transcript variant B (gukh), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_137961.2 |
CG17280-RA (CG17280), mRNA |
| 0 |
0 |
1 |
2 |
8 |
NM_141666.2 |
CG9492-RA (CG9492), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_143141.2 |
CG4548-RB, transcript variant B (XNP), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_170228.1 |
CG4548-RA, transcript variant A (XNP), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_176107.1 |
CG33199-RA, transcript variant A (CG33199), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_136588.2 |
CG8229-RC, transcript variant C (CG8229), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_141657.2 |
CG8273-RA (CG8273), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_135570.3 |
CG6144-RA, transcript variant A (CG6144), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_001038806.1 |
CG6144-RB, transcript variant B (CG6144), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_078527.2 |
CG2151-RA, transcript variant A (Trxr-1), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_167149.1 |
CG2151-RB, transcript variant B (Trxr-1), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_167150.1 |
CG2151-RC, transcript variant C (Trxr-1), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_167151.1 |
CG32715-RA (CG32715), mRNA |
| 0 |
0 |
0 |
13 |
227 |
NM_167482.3 |
CG32580-RA (CG32580), mRNA |
| 0 |
0 |
0 |
9 |
11 |
NM_132912.1 |
CG4521-RA (mthl1), mRNA |
| 0 |
0 |
0 |
8 |
24 |
NM_131978.1 |
CG15465-RA (CG15465), mRNA |
| 0 |
0 |
0 |
5 |
15 |
NM_206362.1 |
CG9425-RB, transcript variant B (CG9425), mRNA |
| 0 |
0 |
0 |
5 |
15 |
NM_140468.2 |
CG9425-RA, transcript variant A (CG9425), mRNA |
| 0 |
0 |
0 |
4 |
8 |
NM_080103.2 |
CG1922-RA (onecut), mRNA |
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