| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
31617R-2 |
| Symbol |
His1:CG31617 |
Full Name |
His1:CG31617 |
| CG No |
CG31617 |
Old CG No |
CG31617 |
| Synonyms |
CG31617, His1:CG31617 |
| Accession No (Link to NCBI) |
NM_165380.3 |
| Inserted Chr. |
ll |
| Insertional Mutation |
3 lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Josserand M, Rubanova N, Stefanutti M, Roumeliotis S, Espenel M, Marshall OJ, Servant N, Gervais L, Bardin AJ.<br> Chromatin state transitions in the Drosophila intestinal lineage identify principles of cell-type specification.<br> Dev Cell (2023) 58(24) 3048-3063.e6
[
PubMed ID = 38056452
]
[
RRC reference
]
Vujatovic O, Zaragoza K, Vaquero A, Reina O, Bernués J, Azorín F.<br> Drosophila melanogaster linker histone dH1 is required for transposon silencing and to preserve genome integrity.<br> Nucleic Acids Res (2012) 40(12) 5402-14
[
PubMed ID = 22406835
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGGCAAAGAAAGCCTCTGCGAC |
| Primer Seq. 3' |
aatctagaggtaccCGGCGGGCTTCGACTTTATGA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 GGNAAAGAAA GCCTCTGCGA CGcCGTCACA TCCGCCAACT CAGCAAATGG TGGACGCTTC
0061 CATTAAAAAT TTAAAGGAAC GTGGCGGTTC ATCACTTCTG GCAATCAAAA AATATATCAC
0121 TGCCACTTAT AAATGCGACG CCCAAAAGTT AGCGCCATTC ATCAAGAAGT ACTTAAAATC
0181 GGCCGTGATC AATGGAAAGC TTATCCAAAC TAAGGGAAAG GGTGCATCTG GATCTTTCAA
0241 ACTGTCGGCC TCTGCCAAGA AGGAAAAGGA TCCGAAGGCA AAGTCGAAGG TTTTGTCTGC
0301 TGAGAAAAAA GTTCAAAGCA AGAAGGTAGC CTCTAAGAAG ATTGGTGTCT CCTCTAAAAA
0361 AACTGCCGTT GGGGCTGCTG ACAAAAAGCC CAAAGCTAAG AAGGCTGTGG CTACCAAAAA
0421 GACTGCCGAA AATAAGAAAA CTGAGAAGGC AAAAGCCAAG GATGCCAAGA AAACTGGAAT
0481 CATAAAGTCG AAGCCCGCCG |
| in silico PCR Fragment |
0001 GGCAAAGAAA GCCTCTGCGA CGCCGTCACA TCCGCCAACT CAGCAAATGG TGGACGCTTC
0061 CATTAAAAAT TTAAAGGAAC GTGGCGGTTC ATCACTTCTG GCAATCAAAA AATATATCAC
0121 TGCCACTTAT AAATGCGACG CCCAAAAGTT AGCGCCATTC ATCAAGAAGT ACTTAAAATC
0181 GGCCGTGGTC AATGGAAAGC TTATCCAAAC TAAGGGAAAG GGTGCATCTG GATCTTTCAA
0241 ACTGTCGGCC TCTGCCAAGA AGGAAAAGGA TCCGAAGGCA AAGTCGAAGG TTTTGTCTGC
0301 TGAGAAAAAA GTTCAAAGCA AGAAGGTAGC CTCTAAGAAG ATTGGTGTCT CCTCTAAAAA
0361 AACTGCCGTT GGGGCTGCTG ACAAAAAGCC CAAAGCTAAG AAGGCTGTGG CTACCAAAAA
0421 GACTGCCGAA AATAAGAAAA CTGAGAAGGC AAAAGCCAAG GATGCCAAGA AAACTGGAAT
0481 CATAAAGTCG AAGCCCGCCG |
| Assemble Data |
<PRE>
31617R-2.IR_full 1 GG<span class="snp"><tt>N</tt></span>AAAGAAAGCCTCTGCGACGCCGTCACATCCGCCAACTCAGCAAATGGTGGACGCTTC 60
||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31617R-2.in silico 1 GG<span class="snp"><tt>C</tt></span>AAAGAAAGCCTCTGCGACGCCGTCACATCCGCCAACTCAGCAAATGGTGGACGCTTC 60
31617R-2.IR_full 61 CATTAAAAATTTAAAGGAACGTGGCGGTTCATCACTTCTGGCAATCAAAAAATATATCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31617R-2.in silico 61 CATTAAAAATTTAAAGGAACGTGGCGGTTCATCACTTCTGGCAATCAAAAAATATATCAC 120
31617R-2.IR_full 121 TGCCACTTATAAATGCGACGCCCAAAAGTTAGCGCCATTCATCAAGAAGTACTTAAAATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31617R-2.in silico 121 TGCCACTTATAAATGCGACGCCCAAAAGTTAGCGCCATTCATCAAGAAGTACTTAAAATC 180
31617R-2.IR_full 181 GGCCGTG<span class="snp"><tt>A</tt></span>TCAATGGAAAGCTTATCCAAACTAAGGGAAAGGGTGCATCTGGATCTTTCAA 240
|||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||||
31617R-2.in silico 181 GGCCGTG<span class="snp"><tt>G</tt></span>TCAATGGAAAGCTTATCCAAACTAAGGGAAAGGGTGCATCTGGATCTTTCAA 240
31617R-2.IR_full 241 ACTGTCGGCCTCTGCCAAGAAGGAAAAGGATCCGAAGGCAAAGTCGAAGGTTTTGTCTGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31617R-2.in silico 241 ACTGTCGGCCTCTGCCAAGAAGGAAAAGGATCCGAAGGCAAAGTCGAAGGTTTTGTCTGC 300
31617R-2.IR_full 301 TGAGAAAAAAGTTCAAAGCAAGAAGGTAGCCTCTAAGAAGATTGGTGTCTCCTCTAAAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31617R-2.in silico 301 TGAGAAAAAAGTTCAAAGCAAGAAGGTAGCCTCTAAGAAGATTGGTGTCTCCTCTAAAAA 360
31617R-2.IR_full 361 AACTGCCGTTGGGGCTGCTGACAAAAAGCCCAAAGCTAAGAAGGCTGTGGCTACCAAAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31617R-2.in silico 361 AACTGCCGTTGGGGCTGCTGACAAAAAGCCCAAAGCTAAGAAGGCTGTGGCTACCAAAAA 420
31617R-2.IR_full 421 GACTGCCGAAAATAAGAAAACTGAGAAGGCAAAAGCCAAGGATGCCAAGAAAACTGGAAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31617R-2.in silico 421 GACTGCCGAAAATAAGAAAACTGAGAAGGCAAAAGCCAAGGATGCCAAGAAAACTGGAAT 480
31617R-2.IR_full 481 CATAAAGTCGAAGCCCGCCG 500
||||||||||||||||||||
31617R-2.in silico 481 CATAAAGTCGAAGCCCGCCG 500
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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