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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
2647R-2 |
| Symbol |
per |
Full Name |
period |
| CG No |
CG2647 |
Old CG No |
CG2647 |
| Synonyms |
PER, dper, EG:155E2.4, CG2647, dPER, Per, Clk, clk-6, per, unamed |
| Accession No (Link to NCBI) |
NM_080317.2 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Sakai T, Inami S, Sato S, Kitamoto T.
Fan-shaped body neurons are involved in period-dependent regulation of long-term courtship memory in Drosophila.
Learn Mem (2012) 19(12) 571-4
[
PubMed ID = 23154928
]
[
RRC reference
]
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.
DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.
Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAAGGAGGACAGCTTCTGCTGC |
| Primer Seq. 3' |
aatctagaggtaccGATATGATCCCGGTGGCCGTG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 AAGGAGGACA GCTTCTGCTG CGTCATCTCC ATGCACGACG GCATCGTCCT GTACACGACG
0061 CCCAGCATCA CCGATGTCCT GGGCTACCCG CGCGACATGT GGCTGGGCAG GTCCTTCATC
0121 GATTTTGTGC ACCTTAAGGA CCGCGCCACC TTCGCCAGTC AGATCACCAC GGGCATACCC
0181 ATTGCGGAAT CCAGGGGCAG CGTGCCCAAG GACGCCAAGA GCACCTTCTG CGTGATGCTG
0241 NGTCGCTACC GGGGACTCAA GTCCGGCGGA TTCGGCGTCA TCGGCAGGCC CGTCAGCTAC
0301 GAACCCTTNC gCCTGGGGCT CACCTTCAGG GAGGcNCCGG AGGAGGCGCG ACCGGACAAC
0361 TACATGGTCT CCAATGGCAC CAACATGCTG CTCGTCATCT GCGCCACNCC GATCAAGAGC
0421 AGCTACAAGG TTCCCGACGA GATTCTCTCA CAGAAGAGCC CCAAGTTCGC CATACgNCAC
0481 ACGGCCACCG GGATCATATC |
| in silico PCR Fragment |
0001 AAGGAGGACA GCTTCTGCTG CGTCATCTCC ATGCACGACG GCATCGTCCT GTACACGACG
0061 CCCAGCATCA CCGATGTCCT GGGCTACCCG CGCGACATGT GGCTGGGCAG GTCCTTCATC
0121 GATTTTGTGC ACCTTAAGGA CCGCGCCACC TTCGCCAGTC AGATCACCAC GGGCATACCC
0181 ATTGCGGAAT CCAGGGGCAG CGTGCCCAAG GACGCCAAGA GCACCTTCTG CGTGATGCTG
0241 CGTCGCTACC GGGGACTCAA GTCCGGCGGA TTCGGCGTCA TCGGCAGGCC CGTCAGCTAC
0301 GAACCCTTCC GCCTGGGGCT CACCTTCAGG GAGGCTCCGG AGGAGGCGCG ACCGGACAAC
0361 TACATGGTCT CCAATGGCAC CAACATGCTG CTCGTCATCT GCGCCACTCC GATCAAGAGC
0421 AGCTACAAGG TTCCCGACGA GATTCTCTCA CAGAAGAGCC CCAAGTTCGC CATACGCCAC
0481 ACGGCCACCG GGATCATATC |
| Assemble Data |
2647R-2.IR_full 1 AAGGAGGACAGCTTCTGCTGCGTCATCTCCATGCACGACGGCATCGTCCTGTACACGACG 60
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2647R-2.in silico 1 AAGGAGGACAGCTTCTGCTGCGTCATCTCCATGCACGACGGCATCGTCCTGTACACGACG 60
2647R-2.IR_full 61 CCCAGCATCACCGATGTCCTGGGCTACCCGCGCGACATGTGGCTGGGCAGGTCCTTCATC 120
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2647R-2.in silico 61 CCCAGCATCACCGATGTCCTGGGCTACCCGCGCGACATGTGGCTGGGCAGGTCCTTCATC 120
2647R-2.IR_full 121 GATTTTGTGCACCTTAAGGACCGCGCCACCTTCGCCAGTCAGATCACCACGGGCATACCC 180
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2647R-2.in silico 121 GATTTTGTGCACCTTAAGGACCGCGCCACCTTCGCCAGTCAGATCACCACGGGCATACCC 180
2647R-2.IR_full 181 ATTGCGGAATCCAGGGGCAGCGTGCCCAAGGACGCCAAGAGCACCTTCTGCGTGATGCTG 240
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2647R-2.in silico 181 ATTGCGGAATCCAGGGGCAGCGTGCCCAAGGACGCCAAGAGCACCTTCTGCGTGATGCTG 240
2647R-2.IR_full 241 GTCGCTACCGGGGACTCAAGTCCGGCGGATTCGGCGTCATCGGCAGGCCCGTCAGCTAC 299
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2647R-2.in silico 241 GTCGCTACCGGGGACTCAAGTCCGGCGGATTCGGCGTCATCGGCAGGCCCGTCAGCTAC 299
2647R-2.IR_full 301 GAACCCTTNCGCCTGGGGCTCACCTTCAGGGAGGCNCCGGAGGAGGCGCGACCGGACAAC 359
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2647R-2.in silico 301 GAACCCTTCCGCCTGGGGCTCACCTTCAGGGAGGCTCCGGAGGAGGCGCGACCGGACAAC 359
2647R-2.IR_full 361 TACATGGTCTCCAATGGCACCAACATGCTGCTCGTCATCTGCGCCACNCCGATCAAGAGC 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
2647R-2.in silico 361 TACATGGTCTCCAATGGCACCAACATGCTGCTCGTCATCTGCGCCACTCCGATCAAGAGC 419
2647R-2.IR_full 421 AGCTACAAGGTTCCCGACGAGATTCTCTCACAGAAGAGCCCCAAGTTCGCCATACGNCAC 479
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2647R-2.in silico 421 AGCTACAAGGTTCCCGACGAGATTCTCTCACAGAAGAGCCCCAAGTTCGCCATACGCCAC 479
2647R-2.IR_full 481 ACGGCCACCGGGATCATATC 499
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2647R-2.in silico 481 ACGGCCACCGGGATCATATC 499
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
1 |
NM_080317.2 |
CG2647-RA (per), mRNA |
| 0 |
0 |
4 |
3 |
4 |
NM_165849.1 |
CG8983-RA, transcript variant A (ERp60), mRNA |
| 0 |
0 |
4 |
3 |
4 |
NM_136866.2 |
CG8983-RB, transcript variant B (ERp60), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_135443.3 |
CG3759-RA (CG3759), mRNA |
| 0 |
0 |
3 |
2 |
2 |
NM_139396.3 |
CG2069-RA (Oseg4), mRNA |
| 0 |
0 |
2 |
6 |
3 |
NM_142831.2 |
CG4813-RA (CG4813), mRNA |
| 0 |
0 |
2 |
5 |
3 |
NM_079930.2 |
CG3856-RB, transcript variant B (Oamb), mRNA |
| 0 |
0 |
2 |
4 |
4 |
NM_168448.1 |
CG32082-RA (CG32082), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_169844.1 |
CG31149-RA (CG31149), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_166125.2 |
CG18255-RA, transcript variant A (Strn-Mlck), mRNA |
| 0 |
0 |
1 |
5 |
3 |
NM_166126.1 |
CG18255-RC, transcript variant C (Strn-Mlck), mRNA |
| 0 |
0 |
1 |
5 |
3 |
NM_166129.2 |
CG18255-RD, transcript variant D (Strn-Mlck), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_206147.1 |
CG9635-RE, transcript variant E (RhoGEF2), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_206146.1 |
CG9635-RF, transcript variant F (RhoGEF2), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_057969.3 |
CG9635-RD, transcript variant D (RhoGEF2), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_166130.1 |
CG18255-RE, transcript variant E (Strn-Mlck), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_079273.2 |
CG4183-RA (Hsp26), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_057244.3 |
CG10501-RA, transcript variant A (amd), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_080097.2 |
CG6699-RA (beta'Cop), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_001038778.1 |
CG3662-RB, transcript variant B (CG3662), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_057738.3 |
CG3969-RA, transcript variant A (PR2), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_057739.3 |
CG3969-RB, transcript variant B (PR2), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_136601.1 |
CG8197-RA (CG8197), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_134705.2 |
CG3662-RA, transcript variant A (CG3662), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_166694.1 |
CG9047-RC, transcript variant C (CG9047), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_166693.1 |
CG9047-RB, transcript variant B (CG9047), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_138131.2 |
CG9047-RA, transcript variant A (CG9047), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_139723.1 |
CG17795-RA, transcript variant A (mthl2), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_176284.1 |
CG17795-RB, transcript variant B (mthl2), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_079677.2 |
CG6027-RA (cdi), mRNA |
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