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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
17156R-1 |
| Symbol |
chinmo |
Full Name |
Chronologically inappropriate morphogenesis |
| CG No |
CG31666 |
Old CG No |
CG17156 |
| Synonyms |
Chinmo, chinmo, CG31666, F, unnamed, l(2)04111, CG10871, CG17156, CG17649 |
| Accession No (Link to NCBI) |
NM_134766.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Dillard C, Narbonne-Reveau K, Foppolo S, Lanet E, Maurange C.<br> Two distinct mechanisms silence <i>chinmo</i> in <i>Drosophila</i> neuroblasts and neuroepithelial cells to limit their self-renewal.<br> Development (2018) 145(2)
[
PubMed ID = 29361557
]
[
RRC reference
]
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.<br> DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.<br> Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
Narbonne-Reveau K, Lanet E, Dillard C, Foppolo S, Chen CH, Parrinello H, Rialle S, Sokol NS, Maurange C.<br> Neural stem cell-encoded temporal patterning delineates an early window of malignant susceptibility in Drosophila.<br> Elife (2016) 5
[
PubMed ID = 27296804
]
[
RRC reference
]
Doggett K, Turkel N, Willoughby LF, Ellul J, Murray MJ, Richardson HE, Brumby AM.<br> BTB-Zinc Finger Oncogenes Are Required for Ras and Notch-Driven Tumorigenesis in Drosophila.<br> PLoS One (2015) 10(7) e0132987
[
PubMed ID = 26207831
]
[
RRC reference
]
Strutt H, Searle E, Thomas-Macarthur V, Brookfield R, Strutt D.<br> A Cul-3-BTB ubiquitylation pathway regulates junctional levels and asymmetry of core planar polarity proteins.<br> Development (2013) 140(8) 1693-702
[
PubMed ID = 23487316
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCGCAGCAGCAGTTCTGCCTCA |
| Primer Seq. 3' |
aatctagaggtaccTCCTCCCAGACCGATTCCGAC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 CGCaGCANGC AGTTCTGCCT CAAATGGAAC AGTTTCTCGT CTAACTTGGC AATAACATTC
0061 TCCAATCTGT TCAAATCGGA TCTACTGGCC GATGTCATAT TATCCTGCGA TGGCGTAGTA
0121 TTCAAAGCCC ACAAACTTAT ATTGGCGGCC TGCTCAAAGA AGTTCGCCGA TCTGTTTGAG
0181 AACACGCCCA CAAATGGCCA GTGCGTCATC ATACTGGAGG CGACCACGCC GGACAACATG
0241 GCCGCTCTGC TGGAGTTCAT GTACAAAGGC GAGGTCCACG TCTCCCAGGA GGCGCTCAAC
0301 AGTTTCCTCA AGTCCGCCGA GAGTTTGCAG GTCAAAGGTC TGTCCACGGA AACGGGACGT
0361 CTGGCGGCAC AGCAGGCACA ACAACACATG GGCGACCTGT CGCCACNTTG ACTCGCCGAC
0421 GGGCAGGCGG AGCGTAAGGA ACAGCCTGAG CGGCGGTagc AGCANGCATC GTTCCCGGCG
0481 GAGTCGGAAT CGGTCTGGGA GGA |
| in silico PCR Fragment |
0001 CGCAGCA-GC AGTTCTGCCT CAAATGGAAC AGTTTCTCGT CTAACTTGGC AATAACATTC
0061 TCCAATCTGT TCAAATCGGA TCTACTGGCC GATGTCATAT TATCCTGCGA TGGCGTAGTA
0121 TTCAAAGCCC ACAAACTTAT ATTGGCGGCC TGCTCAAAGA AGTTCGCCGA TCTGTTTGAG
0181 AACACGCCCA CAAATGGCCA GTGCGTCATC ATACTGGAGG CGACCACGCC GGACAACATG
0241 GCCGCTCTGC TGGAGTTCAT GTACAAAGGC GAGGTCCACG TCTCCCAGGA GGCGCTCAAC
0301 AGTTTCCTCA AGTCCGCCGA GAGTTTGCAG GTCAAAGGTC TGTCCACGGA AACGGGACGT
0361 CTGGCGGCAC AGCAGGCACA ACAACACATG GGCGACCTGT CGCCAC-TTG ACTCGCCGAC
0421 GGGCAGGCGG AGCGTAAGGA ACAGCCTGAG CGGCGGTAGC AGCA-GCATC GTTCCCGGCG
0481 GAGTCGGAAT CGGTCTGGGA GGA |
| Assemble Data |
<PRE>
17156R-1.IR_full 1 CGCAGCA<span class="snp"><tt>N</tt></span>GCAGTTCTGCCTCAAATGGAACAGTTTCTCGTCTAACTTGGCAATAACATTC 60
|||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||||
17156R-1.in silico 1 CGCAGCA<span class="snp"><tt>-</tt></span>GCAGTTCTGCCTCAAATGGAACAGTTTCTCGTCTAACTTGGCAATAACATTC 60
17156R-1.IR_full 61 TCCAATCTGTTCAAATCGGATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17156R-1.in silico 61 TCCAATCTGTTCAAATCGGATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTA 120
17156R-1.IR_full 121 TTCAAAGCCCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17156R-1.in silico 121 TTCAAAGCCCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTGAG 180
17156R-1.IR_full 181 AACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACGCCGGACAACATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17156R-1.in silico 181 AACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACGCCGGACAACATG 240
17156R-1.IR_full 241 GCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCACGTCTCCCAGGAGGCGCTCAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17156R-1.in silico 241 GCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCACGTCTCCCAGGAGGCGCTCAAC 300
17156R-1.IR_full 301 AGTTTCCTCAAGTCCGCCGAGAGTTTGCAGGTCAAAGGTCTGTCCACGGAAACGGGACGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17156R-1.in silico 301 AGTTTCCTCAAGTCCGCCGAGAGTTTGCAGGTCAAAGGTCTGTCCACGGAAACGGGACGT 360
17156R-1.IR_full 361 CTGGCGGCACAGCAGGCACAACAACACATGGGCGACCTGTCGCCAC<span class="snp"><tt>N</tt></span>TTGACTCGCCGAC 420
||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||
17156R-1.in silico 361 CTGGCGGCACAGCAGGCACAACAACACATGGGCGACCTGTCGCCAC<span class="snp"><tt>-</tt></span>TTGACTCGCCGAC 420
17156R-1.IR_full 421 GGGCAGGCGGAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCA<span class="snp"><tt>N</tt></span>GCATCGTTCCCGGCG 480
||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||
17156R-1.in silico 421 GGGCAGGCGGAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCA<span class="snp"><tt>-</tt></span>GCATCGTTCCCGGCG 480
17156R-1.IR_full 481 GAGTCGGAATCGGTCTGGGAGGA 503
|||||||||||||||||||||||
17156R-1.in silico 481 GAGTCGGAATCGGTCTGGGAGGA 503
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
3 |
NM_164430.2 |
CG31666-RD, transcript variant D (CG31666), mRNA |
| 100 |
482 |
0 |
0 |
3 |
NM_134766.3 |
CG31666-RA, transcript variant A (CG31666), mRNA |
| 100 |
482 |
0 |
0 |
3 |
NM_164429.1 |
CG31666-RC, transcript variant C (CG31666), mRNA |
| 100 |
482 |
0 |
0 |
1 |
NM_164428.2 |
CG31666-RB, transcript variant B (CG31666), mRNA |
| 0.2 |
1 |
2 |
2 |
4 |
NM_139951.1 |
CG7072-RA (CG7072), mRNA |
| 0 |
0 |
3 |
12 |
27 |
NM_169819.1 |
CG14307-RE, transcript variant E (fru), mRNA |
| 0 |
0 |
3 |
12 |
27 |
NM_169820.1 |
CG14307-RC, transcript variant C (fru), mRNA |
| 0 |
0 |
3 |
12 |
27 |
NM_169817.1 |
CG14307-RG, transcript variant G (fru), mRNA |
| 0 |
0 |
3 |
12 |
27 |
NM_169818.1 |
CG14307-RH, transcript variant H (fru), mRNA |
| 0 |
0 |
3 |
12 |
26 |
NM_169822.1 |
CG14307-RD, transcript variant D (fru), mRNA |
| 0 |
0 |
3 |
12 |
25 |
NM_206514.1 |
CG14307-RK, transcript variant K (fru), mRNA |
| 0 |
0 |
3 |
12 |
25 |
NM_206516.1 |
CG14307-RI, transcript variant I (fru), mRNA |
| 0 |
0 |
3 |
12 |
25 |
NM_206515.1 |
CG14307-RJ, transcript variant J (fru), mRNA |
| 0 |
0 |
3 |
12 |
25 |
NM_206513.1 |
CG14307-RL, transcript variant L (fru), mRNA |
| 0 |
0 |
3 |
12 |
25 |
NM_206512.1 |
CG14307-RM, transcript variant M (fru), mRNA |
| 0 |
0 |
3 |
12 |
24 |
NM_079673.2 |
CG14307-RF, transcript variant F (fru), mRNA |
| 0 |
0 |
3 |
12 |
24 |
NM_169816.1 |
CG14307-RB, transcript variant B (fru), mRNA |
| 0 |
0 |
3 |
12 |
22 |
NM_169821.1 |
CG14307-RA, transcript variant A (fru), mRNA |
| 0 |
0 |
3 |
9 |
18 |
NM_079155.2 |
CG9102-RA (bab2), mRNA |
| 0 |
0 |
3 |
5 |
12 |
NM_132051.1 |
CG3726-RA (CG3726), mRNA |
| 0 |
0 |
3 |
2 |
3 |
NM_132103.2 |
CG3973-RA (CG3973), mRNA |
| 0 |
0 |
2 |
6 |
8 |
NM_168837.1 |
CG17233-RC, transcript variant C (CG17233), mRNA |
| 0 |
0 |
2 |
6 |
8 |
NM_168836.1 |
CG17233-RA, transcript variant A (CG17233), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_206175.2 |
CG8201-RF, transcript variant F (par-1), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_206176.2 |
CG8201-RD, transcript variant D (par-1), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_206174.2 |
CG8201-RE, transcript variant E (par-1), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_206172.1 |
CG8201-RG, transcript variant G (par-1), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_206173.2 |
CG8201-RC, transcript variant C (par-1), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_001014541.1 |
CG8201-RM, transcript variant M (par-1), mRNA |
| 0 |
0 |
2 |
4 |
7 |
NM_167387.1 |
CG32611-RB (CG32611), mRNA |
|
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Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
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