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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
16987R-2 |
| Symbol |
Alp23B |
Full Name |
Activin Like Protein at 23B |
| CG No |
CG16987 |
Old CG No |
CG16987 |
| Synonyms |
CG16987, Alp23b, Alp, ALP23B, Alp23B |
| Accession No (Link to NCBI) |
NM_078737.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Graca FA, Rai M, Hunt LC, Stephan A, Wang YD, Gordon B, Wang R, Quarato G, Xu B, Fan Y, Labelle M, Demontis F.
The myokine Fibcd1 is an endogenous determinant of myofiber size and mitigates cancer-induced myofiber atrophy.
Nat Commun (2022) 13(1) 2370
[
PubMed ID = 35501350
]
[
RRC reference
]
Eusebio N, Tavares L, Pereira PS.
CtBP represses Dpp-dependent Mad activation during Drosophila eye development.
Dev Biol (2018) 442(1) 188-198
[
PubMed ID = 30031756
]
[
RRC reference
]
Hevia CF, de Celis JF.
Activation and function of TGFβ signalling during Drosophila wing development and its interactions with the BMP pathway.
Dev Biol (2013) 377(1) 138-53
[
PubMed ID = 23485686
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTGGTGTTGCTGGTGTGTCTGG |
| Primer Seq. 3' |
aatctagaggtaccCGGCGACAGATCATCAAAGTG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TGGTGTTGCT GGTGTGTCTG GCCCTGGAGA ACAGGAACGT ATACAATCGC CTGCACGCCC
0061 GCTCCCATCC GAGTTCCCGT GGCGACATCC TTCGTCCGCA TCCTAAGCAC CAGCCGCATC
0121 CCCATGTGCA GCACACCTCG CAACAGCTGC AGCAGCAACA CCATATCCGG CAGCAACGAT
0181 CCCGTCAGCT GAAACACCTG GAACCGGATC CGACCAGCGA GGAGGACGAT GTACCGATCA
0241 CCAAGCGGGA GTACTATGCC CGCCTGAGGC GCCACGTCAT CCACAAGAGG CAGCACCTCC
0301 TGCAGCAGGA GCTCAGCTAC AACCATCCCG GCTCCCATTC GGAGCAGCTA ANAGGTGCCC
0361 CGCCTGTGGC AACACCTCAT GGAGCAGGAG GAGAAGGCAC ACCGACATGT GAGCCCGCCC
0421 GTGGAGTTGC CTATCATGTA CGGAGATGCC CCCGAGGAGT CATCCCTCTC CTCCGATGAT
0481 CACTTTGATG ATCTGTCGCC G |
| in silico PCR Fragment |
0001 TGGTGTTGCT GGTGTGTCTG GCCCTGGAGA ACAGGAACGT ATACAATCGC CTGCACGCCC
0061 GCTCCCATCC GAGTTCCCGT GGCGACATCC TTCGTCCGCA TCCTAAGCAC CAGCCGCATC
0121 CCCATGTGCA GCACACCTCG CAACAGCTGC AGCAGCAACA CCATATCCGG CAGCAACGAT
0181 CCCGTCAGCT GAAACACCTG GAACCGGATC CGACCAGCGA GGAGGACGAT GTACCGATCA
0241 CCAAGCGGGA GTACTATGCC CGCCTGAGGC GCCACGTCAT CCACAAGAGG CAGCACCTCC
0301 TGCAGCAGGA GCTCAGCTAC AACCATCCCG GCTCCCATTC GGAGCAGCTA A-AGGTGCCC
0361 CGCCTGTGGC AACACCTCAT GGAGCAGGAG GAGAAGGCAC ACCGACATGT GAGCCCGCCC
0421 GTGGAGTTGC CTATCATGTA CGGAGATGCC CCCGAGGAGT CATCCCTCTC CTCCGATGAT
0481 CACTTTGATG ATCTGTCGCC G |
| Assemble Data |
16987R-2.IR_full 1 TGGTGTTGCTGGTGTGTCTGGCCCTGGAGAACAGGAACGTATACAATCGCCTGCACGCCC 60
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16987R-2.in silico 1 TGGTGTTGCTGGTGTGTCTGGCCCTGGAGAACAGGAACGTATACAATCGCCTGCACGCCC 60
16987R-2.IR_full 61 GCTCCCATCCGAGTTCCCGTGGCGACATCCTTCGTCCGCATCCTAAGCACCAGCCGCATC 120
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16987R-2.in silico 61 GCTCCCATCCGAGTTCCCGTGGCGACATCCTTCGTCCGCATCCTAAGCACCAGCCGCATC 120
16987R-2.IR_full 121 CCCATGTGCAGCACACCTCGCAACAGCTGCAGCAGCAACACCATATCCGGCAGCAACGAT 180
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16987R-2.in silico 121 CCCATGTGCAGCACACCTCGCAACAGCTGCAGCAGCAACACCATATCCGGCAGCAACGAT 180
16987R-2.IR_full 181 CCCGTCAGCTGAAACACCTGGAACCGGATCCGACCAGCGAGGAGGACGATGTACCGATCA 240
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16987R-2.in silico 181 CCCGTCAGCTGAAACACCTGGAACCGGATCCGACCAGCGAGGAGGACGATGTACCGATCA 240
16987R-2.IR_full 241 CCAAGCGGGAGTACTATGCCCGCCTGAGGCGCCACGTCATCCACAAGAGGCAGCACCTCC 300
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16987R-2.in silico 241 CCAAGCGGGAGTACTATGCCCGCCTGAGGCGCCACGTCATCCACAAGAGGCAGCACCTCC 300
16987R-2.IR_full 301 TGCAGCAGGAGCTCAGCTACAACCATCCCGGCTCCCATTCGGAGCAGCTAANAGGTGCCC 360
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16987R-2.in silico 301 TGCAGCAGGAGCTCAGCTACAACCATCCCGGCTCCCATTCGGAGCAGCTAA-AGGTGCCC 360
16987R-2.IR_full 361 CGCCTGTGGCAACACCTCATGGAGCAGGAGGAGAAGGCACACCGACATGTGAGCCCGCCC 420
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16987R-2.in silico 361 CGCCTGTGGCAACACCTCATGGAGCAGGAGGAGAAGGCACACCGACATGTGAGCCCGCCC 420
16987R-2.IR_full 421 GTGGAGTTGCCTATCATGTACGGAGATGCCCCCGAGGAGTCATCCCTCTCCTCCGATGAT 480
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16987R-2.in silico 421 GTGGAGTTGCCTATCATGTACGGAGATGCCCCCGAGGAGTCATCCCTCTCCTCCGATGAT 480
16987R-2.IR_full 481 CACTTTGATGATCTGTCGCCG 501
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16987R-2.in silico 481 CACTTTGATGATCTGTCGCCG 501
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
13 |
NM_164503.1 |
CG16987-RB, transcript variant B (Alp23B), mRNA |
| 100 |
482 |
0 |
0 |
13 |
NM_078737.2 |
CG16987-RA, transcript variant A (Alp23B), mRNA |
| 0.62 |
3 |
10 |
23 |
69 |
NM_132004.2 |
CG4136-RA (CG4136), mRNA |
| 0.62 |
3 |
2 |
14 |
56 |
NM_132412.1 |
CG9817-RA (CG9817), mRNA |
| 0.62 |
3 |
2 |
2 |
4 |
NM_169950.1 |
CG17299-RG, transcript variant G (SNF4Agamma), mRNA |
| 0.62 |
3 |
2 |
2 |
4 |
NM_001043271.1 |
CG17299-RL, transcript variant L (SNF4Agamma), mRNA |
| 0.41 |
2 |
8 |
17 |
40 |
NM_131964.1 |
CG15470-RA (CG15470), mRNA |
| 0.41 |
2 |
5 |
30 |
87 |
NM_130541.3 |
CG3638-RC, transcript variant C (CG3638), mRNA |
| 0.41 |
2 |
5 |
30 |
87 |
NM_166872.1 |
CG3638-RD, transcript variant D (CG3638), mRNA |
| 0.41 |
2 |
5 |
30 |
86 |
NM_166874.1 |
CG3638-RA, transcript variant A (CG3638), mRNA |
| 0.41 |
2 |
5 |
30 |
86 |
NM_166873.1 |
CG3638-RB, transcript variant B (CG3638), mRNA |
| 0.41 |
2 |
4 |
2 |
5 |
NM_001038758.1 |
CG9908-RB, transcript variant B (disco), mRNA |
| 0.41 |
2 |
4 |
2 |
5 |
NM_078638.2 |
CG9908-RA, transcript variant A (disco), mRNA |
| 0.2 |
1 |
26 |
52 |
87 |
NM_132525.1 |
CG15740-RA (CG15740), mRNA |
| 0.2 |
1 |
3 |
36 |
105 |
NM_176591.1 |
CG15532-RC, transcript variant C (hdc), mRNA |
| 0.2 |
1 |
3 |
36 |
105 |
NM_079853.2 |
CG15532-RA, transcript variant A (hdc), mRNA |
| 0.2 |
1 |
3 |
23 |
70 |
NM_170478.1 |
CG15532-RB, transcript variant B (hdc), mRNA |
| 0.2 |
1 |
3 |
10 |
26 |
NM_145757.2 |
CG30084-RC, transcript variant C (CG30084), mRNA |
| 0.2 |
1 |
3 |
9 |
21 |
NM_137214.3 |
CG30084-RA, transcript variant A (CG30084), mRNA |
| 0.2 |
1 |
3 |
3 |
3 |
NM_176032.1 |
CG33115-RA (CG33115), mRNA |
| 0 |
0 |
19 |
156 |
529 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
| 0 |
0 |
19 |
156 |
529 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
| 0 |
0 |
19 |
156 |
529 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
| 0 |
0 |
11 |
32 |
97 |
NM_206286.1 |
CG10107-RC, transcript variant C (CG10107), mRNA |
| 0 |
0 |
11 |
32 |
97 |
NM_139799.3 |
CG10107-RA, transcript variant A (CG10107), mRNA |
| 0 |
0 |
10 |
67 |
254 |
NM_080376.1 |
CG8118-RA, transcript variant A (mam), mRNA |
| 0 |
0 |
10 |
67 |
254 |
NM_166030.1 |
CG8118-RB, transcript variant B (mam), mRNA |
| 0 |
0 |
10 |
43 |
111 |
NM_079561.2 |
CG9755-RC, transcript variant C (pum), mRNA |
| 0 |
0 |
10 |
43 |
111 |
NM_169259.1 |
CG9755-RD, transcript variant D (pum), mRNA |
| 0 |
0 |
10 |
43 |
111 |
NM_169258.1 |
CG9755-RA, transcript variant A (pum), mRNA |
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