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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 16910R-4 
 Symbol key  Full Name kenny 
 CG No CG16910  Old CG No CG16910 
 Synonyms dIKK-gamma, IKKgamma, Kenny, IKK-gamma, DmIKKgamma, dIKK, dmIKKgamma, CG16910, Dmikkgamma, key, DmIKK-gamma 
 Accession No (Link to NCBI) NM_079132.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees pupal lethal 
 Map Viewer
 Reference
[Please submit your publication] 		Nelson B, Freisinger T, Ishii K, Okado K, Shinzawa N, Fukumoto S, Kanuka H.
Activation of Imd pathway in hemocyte confers infection resistance through humoral response in Drosophila.
Biochem Biophys Res Commun (2013) 430(3) 1120-5 [ PubMed ID = 23261474 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgCGACGTATGTGGTAACGCGCA 
 Primer Seq. 3' 
aatctagaggtaccCGATTTTCGTCTCTAGGTCCC 
 Predicted Fragment Size 
479 
 IR fragment full Seq 
0001 CGACGTATGT GGTAACGCGC AGGAGGCGAA GGAAACCGTT GCCTCTACGA GCACTCAGCC 
0061 GCCAACAGTG AACTGTATTC CAGTCAGCAT CACTGCATCG CAGCAGCAGC ACAAATCGCT 
0121 GGATTCCGGA TCTTCCCAGC AACAATCCCT GGCGACCAGC TTCATTATGG GAGAAATTCA 
0181 ATCCGATGTC CTGAAGAACA GTGTTTATTC GCAGTTTCCC AGCCTCTGCT CGTTGCAGGG 
0241 CTCCGCAGAG GAAGTAGTTA AGCTGCAGAA CATGATGACC GAGTACCTCG CGCTAAAGAG 
0301 CACACTTGAC AAGGTCAACC AAACCATGCT GAACTACCAC AACCTGACTC AACAATGGCG 
0361 CCAGGAAGCC GCCGACCGAG AACACCAGTA CAAGGAGCAT GTGAAAGAGT GCCAAGCGCA 
0421 AATCGCGATC CTTCGCGTGG AAAACCAAGA GCTGAAGAGG GACCTAGAGA CGAAAATCG 
 in silico PCR Fragment 
0001 CGACGTATGT GGTAACGCGC AGGAGGCGAA GGAAACCGTT GCCTCTACGA GCACTCAGCC 
0061 GCCAACAGTG AACTGTATTC CAGTCAGCAT CACTGCATCG CAGCAGCAGC ACAAATCGCT 
0121 GGATTCCGGA TCTTCCCAGC AACAATCCCT GGCGACCAGC TTCATTATGG GAGAAATTCA 
0181 ATCCGATGTC CTGAAGAACA GTGTTTATTC GCAGTTTCCC AGCCTCTGCT CGTTGCAGGG 
0241 CTCCGCAGAG GAAGTAGTTA AGCTGCAGAA CATGATGACC GAGTACCTCG CGCTAAAGAG 
0301 CACACTTGAC AAGGTCAACC AAACCATGCT GAACTACCAC AACCTGACTC AACAATGGCG 
0361 CCAGGAAGCC GCCGACCGAG AACACCAGTA CAAGGAGCAT GTGAAAGAGT GCCAAGCGCA 
0421 AATCGCGATC CTTCGCGTGG AAAACCAAGA GCTGAAGAGG GACCTAGAGA CGAAAATCG 
 Assemble Data 

16910R-4.IR_full       1   CGACGTATGTGGTAACGCGCAGGAGGCGAAGGAAACCGTTGCCTCTACGAGCACTCAGCC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16910R-4.in silico     1   CGACGTATGTGGTAACGCGCAGGAGGCGAAGGAAACCGTTGCCTCTACGAGCACTCAGCC 60


16910R-4.IR_full       61  GCCAACAGTGAACTGTATTCCAGTCAGCATCACTGCATCGCAGCAGCAGCACAAATCGCT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16910R-4.in silico     61  GCCAACAGTGAACTGTATTCCAGTCAGCATCACTGCATCGCAGCAGCAGCACAAATCGCT 120


16910R-4.IR_full       121 GGATTCCGGATCTTCCCAGCAACAATCCCTGGCGACCAGCTTCATTATGGGAGAAATTCA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16910R-4.in silico     121 GGATTCCGGATCTTCCCAGCAACAATCCCTGGCGACCAGCTTCATTATGGGAGAAATTCA 180


16910R-4.IR_full       181 ATCCGATGTCCTGAAGAACAGTGTTTATTCGCAGTTTCCCAGCCTCTGCTCGTTGCAGGG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16910R-4.in silico     181 ATCCGATGTCCTGAAGAACAGTGTTTATTCGCAGTTTCCCAGCCTCTGCTCGTTGCAGGG 240


16910R-4.IR_full       241 CTCCGCAGAGGAAGTAGTTAAGCTGCAGAACATGATGACCGAGTACCTCGCGCTAAAGAG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16910R-4.in silico     241 CTCCGCAGAGGAAGTAGTTAAGCTGCAGAACATGATGACCGAGTACCTCGCGCTAAAGAG 300


16910R-4.IR_full       301 CACACTTGACAAGGTCAACCAAACCATGCTGAACTACCACAACCTGACTCAACAATGGCG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16910R-4.in silico     301 CACACTTGACAAGGTCAACCAAACCATGCTGAACTACCACAACCTGACTCAACAATGGCG 360


16910R-4.IR_full       361 CCAGGAAGCCGCCGACCGAGAACACCAGTACAAGGAGCATGTGAAAGAGTGCCAAGCGCA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16910R-4.in silico     361 CCAGGAAGCCGCCGACCGAGAACACCAGTACAAGGAGCATGTGAAAGAGTGCCAAGCGCA 420


16910R-4.IR_full       421 AATCGCGATCCTTCGCGTGGAAAACCAAGAGCTGAAGAGGGACCTAGAGACGAAAATCG 479
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16910R-4.in silico     421 AATCGCGATCCTTCGCGTGGAAAACCAAGAGCTGAAGAGGGACCTAGAGACGAAAATCG 479



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   461  0  0  0  NM_079132.2  CG16910-RA (key), mRNA 
0   0  3  3  4  NM_166151.2  CG8433-RA, transcript variant A (Ext2), mRNA 
0   0  3  3  4  NM_001032251.1  CG10731-RA, transcript variant A (CG10731), mRNA 
0   0  3  3  3  NM_166150.2  CG8433-RB, transcript variant B (Ext2), mRNA 
0   0  2  5  3  NM_142188.2  CG6276-RA (CG6276), mRNA 
0   0  2  4  7  NM_166125.2  CG18255-RA, transcript variant A (Strn-Mlck), mRNA 
0   0  2  4  6  NM_166129.2  CG18255-RD, transcript variant D (Strn-Mlck), mRNA 
0   0  2  2  4  NM_143422.1  CG11898-RA (CG11898), mRNA 
0   0  1  5  5  NM_057389.4  CG1391-RA, transcript variant A (sol), mRNA 
0   0  1  5  5  NM_206802.1  CG1391-RC, transcript variant C (sol), mRNA 
0   0  1  5  5  NM_057390.4  CG1391-RB, transcript variant B (sol), mRNA 
0   0  1  4  14  NM_079913.2  CG8110-RA, transcript variant A (syd), mRNA 
0   0  1  4  14  NM_168245.2  CG8110-RB, transcript variant B (syd), mRNA 
0   0  1  3  3  NM_135751.2  CG5075-RA (CG5075), mRNA 
0   0  1  2  4  NM_134527.1  CG15322-RA (CG15322), mRNA 
0   0  1  2  2  NM_167402.1  CG1517-RC, transcript variant C (na), mRNA 
0   0  1  2  2  NM_167401.1  CG1517-RB, transcript variant B (na), mRNA 
0   0  1  2  2  NM_168869.1  CG4268-RC, transcript variant C (Pitslre), mRNA 
0   0  1  2  2  NM_140994.2  CG4268-RA, transcript variant A (Pitslre), mRNA 
0   0  0  7  4  NM_079413.2  CG4345-RA (grim), mRNA 
0   0  0  6  7  NM_057379.2  CG8355-RC, transcript variant C (sli), mRNA 
0   0  0  6  7  NM_057380.2  CG8355-RA, transcript variant A (sli), mRNA 
0   0  0  6  4  NM_168667.1  CG32159-RB (CG32159), mRNA 
0   0  0  6  4  NM_176526.1  CG32491-RV, transcript variant V (mod(mdg4)), mRNA 
0   0  0  5  7  NM_165549.2  CG1399-RA, transcript variant A (CG1399), mRNA 
0   0  0  5  5  NM_057400.3  CG6993-RA (ss), mRNA 
0   0  0  5  5  NM_133111.1  CG7358-RA (CG7358), mRNA 
0   0  0  4  17  NM_080536.2  CG4013-RA, transcript variant A (Smr), mRNA 
0   0  0  4  17  NM_167335.1  CG4013-RC, transcript variant C (Smr), mRNA 
0   0  0  4  17  NM_167334.1  CG4013-RB, transcript variant B (Smr), mRNA 

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