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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
15507R-4 |
| Symbol |
kay |
Full Name |
kayak |
| CG No |
CG33956 |
Old CG No |
CG15507 |
| Synonyms |
CG15509, CG15507, DFos, AP-1, Dfos, DFOS, D-fos, D-Fos, fos, Fos, AP1, d-fos, c-Fos, sro, dFRA, dFos, Fra, DFra, dFra, dAP-1, dlhD, CG33956, kay, D-fos/kay |
| Accession No (Link to NCBI) |
NM_001032408.1 |
| Inserted Chr. |
X |
| Insertional Mutation |
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| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Rallis A, Moore C, Ng J.
Signal strength and signal duration define two distinct aspects of JNK-regulated axon stability.
Dev Biol (2010) 339(1) 65-77
[
PubMed ID = 20035736
]
[
RRC reference
]
Ling J, Dubruille R, Emery P.
KAYAK-α modulates circadian transcriptional feedback loops in Drosophila pacemaker neurons.
J Neurosci (2012) 32(47) 16959-70
[
PubMed ID = 23175847
]
[
RRC reference
]
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.
DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.
Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
Mummery-Widmer JL, Yamazaki M, Stoeger T, Novatchkova M, Bhalerao S, Chen D, Dietzl G, Dickson BJ, Knoblich JA.
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi.
Nature (2009) 458(7241) 987-92
[
PubMed ID = 19363474
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGATTGCACTAAAGGCCACCGA |
| Primer Seq. 3' |
aatctagaggtaccCTACTACCACTGCTGCTGTTG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 NATTGCACTA AAGGCCACCG AGATGCAGCA CAACAACAAC GCATTGCAGC AGCaGCAGCA
0061 ACTGCAGCAT CAACTGCTGC AGCAACATCA GCAGCAGTAT CAGCANGCAG CTGCAGCAGC
0121 AGCTCAATTC GCCCGATAAT AATTATATTT GGGCAACCAC GCACAATGCG AATATCAGCA
0181 GAAACAACGC AATGTTGCAG CTGCAGCAGC AACAACTGCG TGCCCCCTGG ATAACCGATT
0241 GCAACAAGCA GCACCACATT AACAACAATA ACAGCATGAA TGTCAATTAC AATCAGCAAT
0301 TGACGCAAAC AGCCGCAGCA GCAGCAGCAG CAGCTAACGC AGTACATGCA ACACAATTAC
0361 AACAACTACA CGCAACAGCA GCAGCAGCAG CATCTAGTGC CCGCAACAAC ATCCCAATCC
0421 AACAGCCACT TCTACCAGTG CAACCAGCAG CAGCAGCAGC AGCAATTCCT GGCGCCCACC
0481 ACCACAACAG CAGCAGTGGT AGTAG |
| in silico PCR Fragment |
0001 GATTGCACTA AAGGCCACCG AGATGCAGCA CAACAACAAC GCATTGCAGC AGCAGCAGCA
0061 ACTGCAGCAT CAACTGCTGC AGCAACATCA GCAGCAGCAT CAGCA-GCAG CTGCAGCAGC
0121 AGCTCAATTC GCCCGATAAT AATTATATTT GGGCAACCAC GCACAATGCG AATATCAGCA
0181 GAAACAACGC AATGTTGCAG CTGCAGCAGC AACAACTGCG TGCCCCCTGG ATAACCGATT
0241 GCAACAAGCA GCACCACATT AACAACAATA ACAGCATGAA TGTCAATTAC AATCAGCAAT
0301 TGACGC-AAC AGCCGCAGCA GCAGCAGCAG CA---AACGC AGTACATGCA ACACAATTAC
0361 AACAACTACA CGCAACAGCA GCAGCAGCAG CATCTAGTGC CCGCAACAAC ATCCCAATCC
0421 AACAGCCACT TCTACCAGTG CAACCAGCAG CAGCAGCAGC AGCAATTCCT GGCGCCCACC
0481 ACCACAACAG CAGCAGTGGT AGTAG |
| Assemble Data |
15507R-4.IR_full 1 ATTGCACTAAAGGCCACCGAGATGCAGCACAACAACAACGCATTGCAGCAGCAGCAGCA 59
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15507R-4.in silico 1 ATTGCACTAAAGGCCACCGAGATGCAGCACAACAACAACGCATTGCAGCAGCAGCAGCA 59
15507R-4.IR_full 61 ACTGCAGCATCAACTGCTGCAGCAACATCAGCAGCAGTATCAGCANGCAGCTGCAGCAGC 119
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
15507R-4.in silico 61 ACTGCAGCATCAACTGCTGCAGCAACATCAGCAGCAGCATCAGCA-GCAGCTGCAGCAGC 119
15507R-4.IR_full 121 AGCTCAATTCGCCCGATAATAATTATATTTGGGCAACCACGCACAATGCGAATATCAGCA 179
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15507R-4.in silico 121 AGCTCAATTCGCCCGATAATAATTATATTTGGGCAACCACGCACAATGCGAATATCAGCA 179
15507R-4.IR_full 181 GAAACAACGCAATGTTGCAGCTGCAGCAGCAACAACTGCGTGCCCCCTGGATAACCGATT 239
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15507R-4.in silico 181 GAAACAACGCAATGTTGCAGCTGCAGCAGCAACAACTGCGTGCCCCCTGGATAACCGATT 239
15507R-4.IR_full 241 GCAACAAGCAGCACCACATTAACAACAATAACAGCATGAATGTCAATTACAATCAGCAAT 299
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15507R-4.in silico 241 GCAACAAGCAGCACCACATTAACAACAATAACAGCATGAATGTCAATTACAATCAGCAAT 299
15507R-4.IR_full 301 TGACGCAAACAGCCGCAGCAGCAGCAGCAGCAGCTAACGCAGTACATGCAACACAATTAC 359
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
15507R-4.in silico 301 TGACGC-AACAGCCGCAGCAGCAGCAGCAGCA---AACGCAGTACATGCAACACAATTAC 359
15507R-4.IR_full 361 AACAACTACACGCAACAGCAGCAGCAGCAGCATCTAGTGCCCGCAACAACATCCCAATCC 419
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15507R-4.in silico 361 AACAACTACACGCAACAGCAGCAGCAGCAGCATCTAGTGCCCGCAACAACATCCCAATCC 419
15507R-4.IR_full 421 AACAGCCACTTCTACCAGTGCAACCAGCAGCAGCAGCAGCAGCAATTCCTGGCGCCCACC 479
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15507R-4.in silico 421 AACAGCCACTTCTACCAGTGCAACCAGCAGCAGCAGCAGCAGCAATTCCTGGCGCCCACC 479
15507R-4.IR_full 481 ACCACAACAGCAGCAGTGGTAGTAG 504
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15507R-4.in silico 481 ACCACAACAGCAGCAGTGGTAGTAG 504
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100.41 |
484 |
52 |
337 |
863 |
NM_001032408.1 |
CG33956-RD, transcript variant D (kay), mRNA |
| 27.8 |
134 |
1092 |
3587 |
6904 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
| 27.8 |
134 |
1092 |
3587 |
6904 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
| 27.8 |
134 |
1092 |
3587 |
6904 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
| 7.67 |
37 |
401 |
1491 |
3449 |
NM_080376.1 |
CG8118-RA, transcript variant A (mam), mRNA |
| 7.67 |
37 |
401 |
1491 |
3449 |
NM_166030.1 |
CG8118-RB, transcript variant B (mam), mRNA |
| 6.63 |
32 |
108 |
341 |
830 |
NM_205900.1 |
CG3327-RC, transcript variant C (E23), mRNA |
| 6.63 |
32 |
108 |
341 |
830 |
NM_079909.2 |
CG3327-RA, transcript variant A (E23), mRNA |
| 6.01 |
29 |
266 |
996 |
2164 |
NM_206628.1 |
CG32767-RB, transcript variant B (CG32767), mRNA |
| 6.01 |
29 |
266 |
996 |
2164 |
NM_131975.3 |
CG32767-RA, transcript variant A (CG32767), mRNA |
| 6.01 |
29 |
232 |
807 |
1522 |
NM_134474.4 |
CG32532-RA (CG32532), mRNA |
| 5.8 |
28 |
263 |
724 |
1272 |
NM_001014565.1 |
CG10491-RB, transcript variant B (vn), mRNA |
| 5.8 |
28 |
263 |
724 |
1272 |
NM_079218.2 |
CG10491-RA, transcript variant A (vn), mRNA |
| 5.8 |
28 |
262 |
1131 |
2814 |
NM_001038734.1 |
CG16902-RC (Hr4), mRNA |
| 5.6 |
27 |
274 |
1024 |
2251 |
NM_079671.2 |
CG7847-RA, transcript variant A (sr), mRNA |
| 5.6 |
27 |
250 |
867 |
1792 |
NM_169786.1 |
CG7847-RB, transcript variant B (sr), mRNA |
| 5.39 |
26 |
218 |
850 |
2283 |
NM_168571.2 |
CG32133-RA (CG32133), mRNA |
| 5.39 |
26 |
185 |
538 |
980 |
NM_132665.1 |
CG15753-RA (CG15753), mRNA |
| 5.18 |
25 |
202 |
652 |
1278 |
NM_137721.1 |
CG18375-RA, transcript variant A (CG18375), mRNA |
| 5.18 |
25 |
202 |
646 |
1198 |
NM_176243.1 |
CG18375-RB, transcript variant B (CG18375), mRNA |
| 4.97 |
24 |
223 |
562 |
1166 |
NM_167239.2 |
CG32677-RA (CG32677), mRNA |
| 4.97 |
24 |
186 |
601 |
1134 |
NM_132172.2 |
CG15478-RA (CG15478), mRNA |
| 4.97 |
24 |
155 |
487 |
941 |
NM_001042796.1 |
CG6775-RC, transcript variant C (rg), mRNA |
| 4.97 |
24 |
155 |
487 |
941 |
NM_080023.1 |
CG6775-RA, transcript variant A (rg), mRNA |
| 4.97 |
24 |
155 |
487 |
941 |
NM_167028.1 |
CG6775-RB, transcript variant B (rg), mRNA |
| 4.97 |
24 |
92 |
336 |
711 |
NM_137046.3 |
CG6191-RA (CG6191), mRNA |
| 4.77 |
23 |
203 |
378 |
419 |
NM_144133.1 |
CG13235-RA (CG13235), mRNA |
| 4.77 |
23 |
188 |
738 |
1663 |
NM_079845.2 |
CG7951-RA (sima), mRNA |
| 4.77 |
23 |
179 |
585 |
1069 |
NM_169657.1 |
CG5166-RB, transcript variant B (Atx2), mRNA |
| 4.77 |
23 |
179 |
582 |
1053 |
NM_169658.2 |
CG5166-RC, transcript variant C (Atx2), mRNA |
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