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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
14902R-2 |
| Symbol |
decay |
Full Name |
death executioner caspase related to Apopain/Yama |
| CG No |
CG14902 |
Old CG No |
CG14902 |
| Synonyms |
caspase 3, Caspase-3, caspase-3, Decay, CG14902, Drosophila executioner caspase related to Apopain/Yama, DECAY, decay, Casp3 |
| Accession No (Link to NCBI) |
NM_058114.3 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Khammari A, Agnès F, Gandille P, Pret AM.
Physiological apoptosis of polar cells during Drosophila oogenesis is mediated by Hid-dependent regulation of Diap1.
Cell Death Differ (2011) 18(5) 793-805
[
PubMed ID = 21113144
]
[
RRC reference
]
Leulier F, Ribeiro PS, Palmer E, Tenev T, Takahashi K, Robertson D, Zachariou A, Pichaud F, Ueda R, Meier P.
Systematic in vivo RNAi analysis of putative components of the Drosophila cell death machinery.
Cell Death Differ (2006) 13(10) 1663-74
[
PubMed ID = 16485033
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgACCAAGATCGCCCATACGCCC |
| Primer Seq. 3' |
aatctagaggtaccGTCATCACAGCGAAGCTGGAG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 ACCAAGATCG cCCATACGCC CACATCGGAG CTGGACCTCA AAAGGATCAT AATCTCGCGC
0061 CCCACCAACG AGGACACATA CGANGAATTG CGCGCGAGCg GGNATNTGCG CTAATCCTGA
0121 ACCACAAGGA TGTCAAGGGA CAGAAGCAGC GCGTGGGCAC CGAACGGGAT CGCGATGACA
0181 TGGAGGCGAC GCTGCAGGGA TTCGGATTCG ATGTACGCAC CTTCGACGAT CTGACCTTCT
0241 CCGAGATCAA CGACACGCTC AAAGAGGTTG CTCGCGAGGA TCACAGTCAA AACGACTGCT
0301 TTGTGTTGGC GGTGATGTCA CACGGCACCG AAGGCAAGGT CTACGCTAAG GACATGTCAT
0361 ATCCTGTGGA GCGCCTTTGG AATCCCTTCC TCGGCGACAA CTGCAAGACG CTCAAGAACA
0421 AACCCAAACT CTTCTTCATC CAGGCCTGTC GNGGAGCCAA CCTGGAAAAG GCAGTCGAGT
0481 TCTCCAGcTT CGCTGTGATG AC |
| in silico PCR Fragment |
0001 ACCAAGATCG CCCATACGCC CACATCGGAG CTGGACCTCA AAAGGATCAT AATCTCGCGC
0061 CCCACCAACG AGGACACATA CGA-GAATTG CGCGCGAGCG GGCAT-TGCG CTAATCCTGA
0121 ACCACAAGGA TGTCAAGGGA CAGAAGCAGC GCGTGGGCAC CGAACGGGAT CGCGATGACA
0181 TGGAGGCGAC GCTGCAGGGA TTCGGATTCG ATGTACGCAC CTTCGACGAT CTGACCTTCT
0241 CCGAGATCAA CGACACGCTC AAAGAGGTTG CTCGGGAGGA TCACAGTCAA AACGACTGCT
0301 TTGTGTTGGC GGTGATGTCA CACGGCACCG AAGGCAAGGT CTACGCTAAG GACATGTCAT
0361 ATCCTGTGGA GCGCCTTTGG AATCCCTTCC TCGGCGACAA CTGCAAGACG CTCAAGAACA
0421 AACCCAAACT CTTCTTCATC CAGGCCTGTC GCGGAGCCAA CCTGGAAAAG GCAGTCGAGT
0481 TCTCCAGCTT CGCTGTGATG AC |
| Assemble Data |
14902R-2.IR_full 1 ACCAAGATCGCCCATACGCCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGC 60
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14902R-2.in silico 1 ACCAAGATCGCCCATACGCCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGC 60
14902R-2.IR_full 61 CCCACCAACGAGGACACATACGANGAATTGCGCGCGAGCGGGNATNTGCGCTAATCCTGA 120
||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||
14902R-2.in silico 61 CCCACCAACGAGGACACATACGA-GAATTGCGCGCGAGCGGGCAT-TGCGCTAATCCTGA 120
14902R-2.IR_full 121 ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGATCGCGATGACA 180
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14902R-2.in silico 121 ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGATCGCGATGACA 180
14902R-2.IR_full 181 TGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCACCTTCGACGATCTGACCTTCT 240
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14902R-2.in silico 181 TGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCACCTTCGACGATCTGACCTTCT 240
14902R-2.IR_full 241 CCGAGATCAACGACACGCTCAAAGAGGTTGCTCGCGAGGATCACAGTCAAAACGACTGCT 300
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14902R-2.in silico 241 CCGAGATCAACGACACGCTCAAAGAGGTTGCTCGGGAGGATCACAGTCAAAACGACTGCT 300
14902R-2.IR_full 301 TTGTGTTGGCGGTGATGTCACACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCAT 360
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14902R-2.in silico 301 TTGTGTTGGCGGTGATGTCACACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCAT 360
14902R-2.IR_full 361 ATCCTGTGGAGCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA 420
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14902R-2.in silico 361 ATCCTGTGGAGCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA 420
14902R-2.IR_full 421 AACCCAAACTCTTCTTCATCCAGGCCTGTCGNGGAGCCAACCTGGAAAAGGCAGTCGAGT 480
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14902R-2.in silico 421 AACCCAAACTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAGGCAGTCGAGT 480
14902R-2.IR_full 481 TCTCCAGCTTCGCTGTGATGAC 502
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14902R-2.in silico 481 TCTCCAGCTTCGCTGTGATGAC 502
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_058114.3 |
CG14902-RA (decay), mRNA |
| 0 |
0 |
3 |
4 |
4 |
NM_079259.2 |
CG4974-RA (dally), mRNA |
| 0 |
0 |
2 |
5 |
6 |
NM_132858.2 |
CG9056-RA (CG9056), mRNA |
| 0 |
0 |
2 |
3 |
5 |
NM_078591.2 |
CG15749-RA (dmrt11E), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_136174.1 |
CG10659-RA (CG10659), mRNA |
| 0 |
0 |
1 |
7 |
5 |
NM_140316.2 |
CG32104-RB (CG32104), mRNA |
| 0 |
0 |
1 |
5 |
3 |
NM_136935.1 |
CG8834-RA (CG8834), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_079607.2 |
CG6174-RA (Arp87C), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_142269.1 |
CG8925-RA (CG8925), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_176501.1 |
CG18525-RB, transcript variant B (Spn5), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_080215.2 |
CG18525-RA, transcript variant A (Spn5), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_170529.2 |
CG12070-RB, transcript variant B (Sap-r), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_079858.3 |
CG12070-RA, transcript variant A (Sap-r), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_001043263.1 |
CG34157-RF, transcript variant F (Dys), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_001043257.1 |
CG34157-RH, transcript variant H (Dys), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_001043259.1 |
CG34157-RC, transcript variant C (Dys), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_001043258.1 |
CG34157-RA, transcript variant A (Dys), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_001043261.1 |
CG34157-RG, transcript variant G (Dys), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_001043256.1 |
CG34157-RB, transcript variant B (Dys), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_001043260.1 |
CG34157-RD, transcript variant D (Dys), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_001042986.1 |
CG17704-RF, transcript variant F (Nipped-B), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_001042987.1 |
CG17704-RE, transcript variant E (Nipped-B), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_141608.2 |
CG18005-RA (CG18005), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_001038878.1 |
CG2956-RB, transcript variant B (twi), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_079092.2 |
CG2956-RA, transcript variant A (twi), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_143614.1 |
CG1499-RA, transcript variant A (CG1499), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_170552.1 |
CG1499-RB, transcript variant B (CG1499), mRNA |
| 0 |
0 |
0 |
4 |
15 |
NM_165181.1 |
CG17927-RC, transcript variant C (Mhc), mRNA |
| 0 |
0 |
0 |
4 |
15 |
NM_165186.1 |
CG17927-RD, transcript variant D (Mhc), mRNA |
| 0 |
0 |
0 |
4 |
15 |
NM_165188.1 |
CG17927-RI, transcript variant I (Mhc), mRNA |
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