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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
13781R-1 |
| Symbol |
Pvf3 |
Full Name |
PDGF- and VEGF-related factor 3 |
| CG No |
CG34378 |
Old CG No |
CG13781 |
| Synonyms |
CG13783, Pvf3, PDGF- and VEGF-related factor 3, CG31629, CG13781, CG13782, CG4492, DmVEGF-3, Vegf27Ca, VEGF27Ca, PVFs, VEGF, PVF, PVF3, CG34378 |
| Accession No (Link to NCBI) |
NM_078776.4 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
male lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Pan X, O'Connor MB.<br> Coordination among multiple receptor tyrosine kinase signals controls Drosophila developmental timing and body size.<br> Cell Rep (2021) 36(9) 109644
[
PubMed ID = 34469735
]
[
RRC reference
]
Lopez-Bellido R, Puig S, Huang PJ, Tsai CR, Turner HN, Galko MJ, Gutstein HB.<br> Growth Factor Signaling Regulates Mechanical Nociception in Flies and Vertebrates.<br> J Neurosci (2019) 39(30) 6012-6030
[
PubMed ID = 31138657
]
[
RRC reference
]
Wu Y, Brock AR, Wang Y, Fujitani K, Ueda R, Galko MJ.<br> A blood-borne PDGF/VEGF-like ligand initiates wound-induced epidermal cell migration in Drosophila larvae.<br> Curr Biol (2009) 19(17) 1473-7
[
PubMed ID = 19646875
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAATACCCTGCGGCTTGCCTTG |
| Primer Seq. 3' |
aatctagaggtaccATCTCGATTTGCTGCCACTGC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 AATACCCTGC GGCTTGCCTT GATTTTCCTA AGTTTTGTTC GCCTGGAGGC GCAGGCTAAT
0061 GTTCAGAATA ATGGCTGGCA GAAGGTGTTG CCTGATGACT TCAGACGAGA ACGTGATAAA
0121 AGTTCAACCA GAACGCGCCG GAATCCGCAG GAGGAATTGC GCCTGAGACA CGAGCAGCAT
0181 CATTTGCGCC TGCAGCAACA TCAGATGGCG TGGGAGCTGG ACTTGCAGCG GCAGCTGCAG
0241 TCAGCATCTG CAGGAGCAGC AGTCGGAGCA GTCGGAGCAG CAGAGCCGGC CGGTGCGTCA
0301 TCATCAGCAT AAATCTCACA CCAAGGAGCT GGCCAAGAAG CCCATTAGAC GGGCACCAAG
0361 TTTANGCGAT GACAAGGCCA AGATGGTGCA GAAGCGCAGA CTACACTACA ACGAGTACGA
0421 TAACGAAGAT CTCGAGCTGC ACACCATCGA AACCGGCGAT CAGGGGACCT TCACCCCGCG
0481 GCAGTGGCAG CAAATCGAGA T |
| in silico PCR Fragment |
0001 AATACCCTGC GGCTTGCCTT GATTTTCCTA AGTTTTGTTC GCCTGGAGGC GCAGGCTAAT
0061 GTTCAGAATA ATGGCTGGCA GAAGGTGTTG CCTGATGACT TCAGACGAGA ACGTGATAAA
0121 AGTTCAACCA GAACGCGCCG GAATCCGCAG GAGGAATTGC GCCTGAGACA CGAGCAGCAT
0181 CATTTGCGCC TGCAGCAACA TCAGATGGCG TGGGAGCTGG ACTTGCAGCG GCAGCTGCAG
0241 -CAGCATCTG CAGGAGCAGC AGTCGGAGCA GTCGGAGCAG CAGAGCCGGC CGGTGCGTCA
0301 TCATCAGCAT AAATCTCACA CCAAGGAACT GGCCAAGAAG CCCATTAGAC GGGCACCGAG
0361 TTTCGGCGAT GACAAGGCCA AGATGGTGCA GAAGCGCAGA CTACACTACA ACGAGTACGA
0421 TAACGAAGAT CTCGAGCTGC ACACCATCGA AACCGGCGAT CAGGGGACCT TCACCCCGCG
0481 GCAGTGGCAG CAAATCGAGA T |
| Assemble Data |
<PRE>
13781R-1.IR_full 1 AATACCCTGCGGCTTGCCTTGATTTTCCTAAGTTTTGTTCGCCTGGAGGCGCAGGCTAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13781R-1.in silico 1 AATACCCTGCGGCTTGCCTTGATTTTCCTAAGTTTTGTTCGCCTGGAGGCGCAGGCTAAT 60
13781R-1.IR_full 61 GTTCAGAATAATGGCTGGCAGAAGGTGTTGCCTGATGACTTCAGACGAGAACGTGATAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13781R-1.in silico 61 GTTCAGAATAATGGCTGGCAGAAGGTGTTGCCTGATGACTTCAGACGAGAACGTGATAAA 120
13781R-1.IR_full 121 AGTTCAACCAGAACGCGCCGGAATCCGCAGGAGGAATTGCGCCTGAGACACGAGCAGCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13781R-1.in silico 121 AGTTCAACCAGAACGCGCCGGAATCCGCAGGAGGAATTGCGCCTGAGACACGAGCAGCAT 180
13781R-1.IR_full 181 CATTTGCGCCTGCAGCAACATCAGATGGCGTGGGAGCTGGACTTGCAGCGGCAGCTGCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13781R-1.in silico 181 CATTTGCGCCTGCAGCAACATCAGATGGCGTGGGAGCTGGACTTGCAGCGGCAGCTGCAG 240
13781R-1.IR_full 241 <span class="snp"><tt>T</tt></span>CAGCATCTGCAGGAGCAGCAGTCGGAGCAGTCGGAGCAGCAGAGCCGGCCGGTGCGTCA 300
<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13781R-1.in silico 241 <span class="snp"><tt>-</tt></span>CAGCATCTGCAGGAGCAGCAGTCGGAGCAGTCGGAGCAGCAGAGCCGGCCGGTGCGTCA 300
13781R-1.IR_full 301 TCATCAGCATAAATCTCACACCAAGGA<span class="snp"><tt>G</tt></span>CTGGCCAAGAAGCCCATTAGACGGGCACC<span class="snp"><tt>A</tt></span>AG 360
|||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||
13781R-1.in silico 301 TCATCAGCATAAATCTCACACCAAGGA<span class="snp"><tt>A</tt></span>CTGGCCAAGAAGCCCATTAGACGGGCACC<span class="snp"><tt>G</tt></span>AG 360
13781R-1.IR_full 361 TTT<span class="snp"><tt>A</tt></span><span class="snp"><tt>N</tt></span>GCGATGACAAGGCCAAGATGGTGCAGAAGCGCAGACTACACTACAACGAGTACGA 420
|||<span class="snp"><tt> </tt></span><span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||||
13781R-1.in silico 361 TTT<span class="snp"><tt>C</tt></span><span class="snp"><tt>G</tt></span>GCGATGACAAGGCCAAGATGGTGCAGAAGCGCAGACTACACTACAACGAGTACGA 420
13781R-1.IR_full 421 TAACGAAGATCTCGAGCTGCACACCATCGAAACCGGCGATCAGGGGACCTTCACCCCGCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13781R-1.in silico 421 TAACGAAGATCTCGAGCTGCACACCATCGAAACCGGCGATCAGGGGACCTTCACCCCGCG 480
13781R-1.IR_full 481 GCAGTGGCAGCAAATCGAGAT 501
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13781R-1.in silico 481 GCAGTGGCAGCAAATCGAGAT 501
</PRE>
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
20 |
NM_078776.4 |
CG31629-RA, transcript variant A (Pvf3), mRNA |
| 100 |
482 |
0 |
0 |
18 |
NM_135254.2 |
CG31629-RB, transcript variant B (Pvf3), mRNA |
| 1.45 |
7 |
4 |
28 |
98 |
NM_080157.2 |
CG11648-RB, transcript variant B (Abd-B), mRNA |
| 1.03 |
5 |
4 |
16 |
15 |
NM_132311.2 |
CG12119-RA (CG12119), mRNA |
| 0.82 |
4 |
3 |
7 |
28 |
NM_141040.1 |
CG7752-RA (Z4), mRNA |
| 0.62 |
3 |
6 |
47 |
153 |
NM_132413.1 |
CG15295-RA (CG15295), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_170641.1 |
CG32464-RF, transcript variant F (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_169047.1 |
CG32464-RD, transcript variant D (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_001031978.1 |
CG32464-RM, transcript variant M (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_001043214.1 |
CG32464-RO, transcript variant O (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_170640.2 |
CG32464-RK, transcript variant K (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_206429.1 |
CG32464-RG, transcript variant G (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_169038.1 |
CG32464-RJ, transcript variant J (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_001031977.1 |
CG32464-RN, transcript variant N (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_001043213.1 |
CG32464-RP, transcript variant P (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_143760.2 |
CG32464-RB, transcript variant B (l(3)82Fd), mRNA |
| 0.62 |
3 |
3 |
2 |
21 |
NM_169039.2 |
CG32464-RL, transcript variant L (l(3)82Fd), mRNA |
| 0.41 |
2 |
3 |
4 |
63 |
NM_165232.1 |
CG5674-RB, transcript variant B (CG5674), mRNA |
| 0.41 |
2 |
3 |
4 |
63 |
NM_136012.4 |
CG5674-RA, transcript variant A (CG5674), mRNA |
| 0.41 |
2 |
3 |
4 |
63 |
NM_165233.1 |
CG5674-RC, transcript variant C (CG5674), mRNA |
| 0.41 |
2 |
2 |
15 |
81 |
NM_168361.1 |
CG16711-RB, transcript variant B (CG16711), mRNA |
| 0.41 |
2 |
2 |
15 |
81 |
NM_140090.1 |
CG16711-RA, transcript variant A (CG16711), mRNA |
| 0.41 |
2 |
2 |
9 |
55 |
NM_080340.2 |
CG2302-RA (nAcRalpha-7E), mRNA |
| 0 |
0 |
18 |
32 |
266 |
NM_079671.2 |
CG7847-RA, transcript variant A (sr), mRNA |
| 0 |
0 |
18 |
32 |
248 |
NM_169786.1 |
CG7847-RB, transcript variant B (sr), mRNA |
| 0 |
0 |
6 |
9 |
17 |
NM_167643.1 |
CG32537-RA (CG32537), mRNA |
| 0 |
0 |
5 |
16 |
100 |
NM_143745.2 |
CG18389-RA (Eip93F), mRNA |
| 0 |
0 |
5 |
16 |
55 |
NM_165163.1 |
CG4952-RE, transcript variant E (dac), mRNA |
| 0 |
0 |
5 |
16 |
53 |
NM_165160.1 |
CG4952-RA, transcript variant A (dac), mRNA |
| 0 |
0 |
5 |
16 |
53 |
NM_001014487.1 |
CG4952-RF, transcript variant F (dac), mRNA |
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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