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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
13624R-3 |
| Symbol |
CG13624 |
Full Name |
CG13624 |
| CG No |
CG13624 |
Old CG No |
CG13624 |
| Synonyms |
anon-WO0153538.65, CG13624 |
| Accession No (Link to NCBI) |
NM_170150.1 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Saavedra P, Dumesic PA, Hu Y, Filine E, Jouandin P, Binari R, Wilensky SE, Rodiger J, Wang H, Chen W, Liu Y, Spiegelman BM, Perrimon N.<br> REPTOR and CREBRF encode key regulators of muscle energy metabolism.<br> Nat Commun (2023) 14(1) 4943
[
PubMed ID = 37582831
]
[
RRC reference
]
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.<br> DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.<br> Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTCAGCTGTATCCCATGTCATC |
| Primer Seq. 3' |
aatctagaggtaccCCAGTGCATCTAGTCCAAAGT |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TCAGCTGTAT CCCATGTCAT CGGAGTTCTT TGACACCGGC TCGAACAGCA GCAGCAACAC
0061 ACTTAAATAC GATCTGTATT CCCTGGGCTC CACCGTTGTG GGGGCGGCGC TGCCCACGTN
0121 TGACGATCAA CACGGGCTAC GGCAGCAGCA GCAGCNAACA ATAACAACAC TAATAACAAC
0181 AATAACAACA GCAGTAGTCA CAGCAGCAGC AGCAACTGCT CCATCAGCAC CACAAATACC
0241 TGTAATGTAA TGCTAAGTAC AACGGCCATA ACAATACCAC GCAGCAGCAA CCACAACCAG
0301 ATCCATCATC ATCCGTATCA GCAGTCCGAT TTGCAGACAC CGCGCCATCA TCCCAGTCCT
0361 CTACACACGT TGCCCAGCAT GACCCATCAG CAAAATCAGC TTCAGCAGCA GCAGCAGCAG
0421 CAACACCACA ACCAACAGCA GCAGCTGCAG CAATCGCATT TGGCACTGGG AGAGCTTTCA
0481 GACTTTGGAC TAGATGCACT GG |
| in silico PCR Fragment |
0001 TCAGCTGTAT CCCATGTCAT CGGAGTTCTT TGACACCGGC TCGAACAGCA GCAGCAACAC
0061 ACTTAAATAC GATCTGTATT CCCTGGGCTC CACCGTTGTG GGGGCGGCGC TGCCCACGT-
0121 TGACGATCAA CACGGGCTAC GGCAGCAGCA GCAGC-AACA ATAACAACAC TAATAACAAC
0181 AATAACAACA GCAGTAGTCA CAGCAGCAGC AGCAACTGCT CCACCAGCAC CACAAATACC
0241 TGTAATGTAA TGCTAAGTAC AACGGCCATA ACAATACCAC GCAGCAGCAA CCACAACCAG
0301 ATCCATCATC ATCCGTATCA GCAGTCCGAT TTGCAGACAC CGCGCCATCA TCCCAGTCCT
0361 CTACACACGT TGCCCAGCAT GACCCATCAG CAAAATCAGC TTCAGCAGCA GCAGCAGCAG
0421 CAACACCACA ACCAACAGCA GCAGCTGCAG CAATCGCATT TGGCACTGGG AGAGCTTTCA
0481 GACTTTGGAC TAGATGCACT GG |
| Assemble Data |
<PRE>
13624R-3.IR_full 1 TCAGCTGTATCCCATGTCATCGGAGTTCTTTGACACCGGCTCGAACAGCAGCAGCAACAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13624R-3.in silico 1 TCAGCTGTATCCCATGTCATCGGAGTTCTTTGACACCGGCTCGAACAGCAGCAGCAACAC 60
13624R-3.IR_full 61 ACTTAAATACGATCTGTATTCCCTGGGCTCCACCGTTGTGGGGGCGGCGCTGCCCACGT<span class="snp"><tt>N</tt></span> 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>
13624R-3.in silico 61 ACTTAAATACGATCTGTATTCCCTGGGCTCCACCGTTGTGGGGGCGGCGCTGCCCACGT<span class="snp"><tt>-</tt></span> 120
13624R-3.IR_full 121 TGACGATCAACACGGGCTACGGCAGCAGCAGCAGC<span class="snp"><tt>N</tt></span>AACAATAACAACACTAATAACAAC 180
|||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||
13624R-3.in silico 121 TGACGATCAACACGGGCTACGGCAGCAGCAGCAGC<span class="snp"><tt>-</tt></span>AACAATAACAACACTAATAACAAC 180
13624R-3.IR_full 181 AATAACAACAGCAGTAGTCACAGCAGCAGCAGCAACTGCTCCA<span class="snp"><tt>T</tt></span>CAGCACCACAAATACC 240
|||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||
13624R-3.in silico 181 AATAACAACAGCAGTAGTCACAGCAGCAGCAGCAACTGCTCCA<span class="snp"><tt>C</tt></span>CAGCACCACAAATACC 240
13624R-3.IR_full 241 TGTAATGTAATGCTAAGTACAACGGCCATAACAATACCACGCAGCAGCAACCACAACCAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13624R-3.in silico 241 TGTAATGTAATGCTAAGTACAACGGCCATAACAATACCACGCAGCAGCAACCACAACCAG 300
13624R-3.IR_full 301 ATCCATCATCATCCGTATCAGCAGTCCGATTTGCAGACACCGCGCCATCATCCCAGTCCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13624R-3.in silico 301 ATCCATCATCATCCGTATCAGCAGTCCGATTTGCAGACACCGCGCCATCATCCCAGTCCT 360
13624R-3.IR_full 361 CTACACACGTTGCCCAGCATGACCCATCAGCAAAATCAGCTTCAGCAGCAGCAGCAGCAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13624R-3.in silico 361 CTACACACGTTGCCCAGCATGACCCATCAGCAAAATCAGCTTCAGCAGCAGCAGCAGCAG 420
13624R-3.IR_full 421 CAACACCACAACCAACAGCAGCAGCTGCAGCAATCGCATTTGGCACTGGGAGAGCTTTCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13624R-3.in silico 421 CAACACCACAACCAACAGCAGCAGCTGCAGCAATCGCATTTGGCACTGGGAGAGCTTTCA 480
13624R-3.IR_full 481 GACTTTGGACTAGATGCACTGG 502
||||||||||||||||||||||
13624R-3.in silico 481 GACTTTGGACTAGATGCACTGG 502
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
12 |
65 |
181 |
NM_170152.1 |
CG13624-RD, transcript variant D (CG13624), mRNA |
| 100 |
482 |
12 |
65 |
181 |
NM_170151.1 |
CG13624-RB, transcript variant B (CG13624), mRNA |
| 100 |
482 |
12 |
65 |
181 |
NM_001043287.1 |
CG13624-RE, transcript variant E (CG13624), mRNA |
| 100 |
482 |
12 |
65 |
181 |
NM_170150.1 |
CG13624-RA, transcript variant A (CG13624), mRNA |
| 100 |
482 |
12 |
65 |
181 |
NM_001043288.1 |
CG13624-RF, transcript variant F (CG13624), mRNA |
| 100 |
482 |
12 |
65 |
181 |
NM_143014.2 |
CG13624-RC, transcript variant C (CG13624), mRNA |
| 25.31 |
122 |
481 |
1643 |
3623 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
| 25.31 |
122 |
481 |
1643 |
3623 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
| 25.31 |
122 |
481 |
1643 |
3623 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
| 7.26 |
35 |
189 |
717 |
1692 |
NM_080376.1 |
CG8118-RA, transcript variant A (mam), mRNA |
| 7.26 |
35 |
187 |
714 |
1688 |
NM_166030.1 |
CG8118-RB, transcript variant B (mam), mRNA |
| 5.6 |
27 |
77 |
281 |
595 |
NM_167239.2 |
CG32677-RA (CG32677), mRNA |
| 5.18 |
25 |
132 |
481 |
1226 |
NM_079671.2 |
CG7847-RA, transcript variant A (sr), mRNA |
| 5.18 |
25 |
121 |
416 |
998 |
NM_169786.1 |
CG7847-RB, transcript variant B (sr), mRNA |
| 4.77 |
23 |
154 |
575 |
1431 |
NM_168571.2 |
CG32133-RA (CG32133), mRNA |
| 4.77 |
23 |
132 |
480 |
1436 |
NM_001038734.1 |
CG16902-RC (Hr4), mRNA |
| 4.77 |
23 |
123 |
368 |
805 |
NM_134474.4 |
CG32532-RA (CG32532), mRNA |
| 4.77 |
23 |
71 |
244 |
602 |
NM_168461.2 |
CG11711-RA, transcript variant A (Mob1), mRNA |
| 4.56 |
22 |
77 |
219 |
420 |
NM_133012.2 |
CG32560-RA (CG32560), mRNA |
| 4.35 |
21 |
115 |
438 |
1071 |
NM_131975.3 |
CG32767-RA, transcript variant A (CG32767), mRNA |
| 4.35 |
21 |
115 |
438 |
1071 |
NM_206628.1 |
CG32767-RB, transcript variant B (CG32767), mRNA |
| 4.35 |
21 |
50 |
167 |
217 |
NM_144133.1 |
CG13235-RA (CG13235), mRNA |
| 4.14 |
20 |
90 |
308 |
630 |
NM_001038965.1 |
CG9924-RE, transcript variant E (CG9924), mRNA |
| 4.14 |
20 |
77 |
307 |
668 |
NM_001014565.1 |
CG10491-RB, transcript variant B (vn), mRNA |
| 4.14 |
20 |
77 |
307 |
666 |
NM_079218.2 |
CG10491-RA, transcript variant A (vn), mRNA |
| 4.14 |
20 |
47 |
161 |
246 |
NM_144114.3 |
CG14494-RA (CG14494), mRNA |
| 3.73 |
18 |
74 |
258 |
683 |
NM_137721.1 |
CG18375-RA, transcript variant A (CG18375), mRNA |
| 3.73 |
18 |
74 |
251 |
647 |
NM_176243.1 |
CG18375-RB, transcript variant B (CG18375), mRNA |
| 3.73 |
18 |
55 |
198 |
506 |
NM_143745.2 |
CG18389-RA (Eip93F), mRNA |
| 3.52 |
17 |
104 |
277 |
589 |
NM_206456.1 |
CG32466-RB, transcript variant B (rn), mRNA |
|
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Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
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