| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
12230R-1 |
| Symbol |
car |
Full Name |
carnation |
| CG No |
CG12230 |
Old CG No |
CG12230 |
| Synonyms |
car, Vps33/carnation, Vps33p, Vps33, Dm-Vps33, l(1)G0447, CG12230 |
| Accession No (Link to NCBI) |
|
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
early pupal lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Lee YM, Sun YH.
Maintenance of glia in the optic lamina is mediated by EGFR signaling by photoreceptors in adult Drosophila.
PLoS Genet. (2015) 11(4) e1005187
[
PubMed ID = 25909451
]
[
RRC reference
]
Takáts S, Pircs K, Nagy P, Varga Á, Kárpáti M, Hegedűs K, Kramer H, Kovács AL, Sass M, Juhász G.
Interaction of the HOPS complex with Syntaxin 17 mediates autophagosome clearance in Drosophila.
Mol. Biol. Cell (2014) 25(8) 1338-54
[
PubMed ID = 24554766
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGATCGAGGCATCCGTCTGCTG |
| Primer Seq. 3' |
aatctagaggtaccACGACACCCTTGTCGCCGTTG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
|
| in silico PCR Fragment |
|
| Assemble Data |
12230R-1.IR full 1 ATCAAGGCATCCGTCTGCTGGCCCTCAAGCCGGAGCTTCATTTGCCGCGCGAGGTGGCC 59
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
12230R-1.in silico 1 ATCGAGGCATCCGTCTGCTGGCCCTCAAGCCGGAGCTTCATTTGCCGCGCGAGGTGGCC 59
12230R-1.IR full 61 AATGTGGTGTACGTGATGCGCCCAC-CGTGGCGCTGATGGAGCAGCTGGCCGCCCACGTG 119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
12230R-1.in silico 61 AATGTGGTGTACGTGATGCGCCCACGCGTGGCGCTGATGGAGCAGCTGGCCGCCCACGTG 119
12230R-1.IR full 121 AAGGCAGGCGGAAGAGCGGCCGCTGGACGGCAGTACCACATCCTGTTCGCCCCGAGGCGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12230R-1.in silico 121 AAGGCAGGCGGAAGAGCGGCCGCTGGACGGCAGTACCACATCCTGTTCGCCCCGAGGCGG 179
12230R-1.IR full 181 TCATGTCTGTGCGTCAGCCAACTGGAGGTCAGCGGCGTGTTGGGCAGCTTCGGAAACATC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12230R-1.in silico 181 TCATGTCTGTGCGTCAGCCAACTGGAGGTCAGCGGCGTGTTGGGCAGCTTCGGAAACATC 239
12230R-1.IR full 241 GAGGAACTGGCCTGGAACTATCTGCCGCTGGATGTCGACCTGGTATCGATGGAGATNCCC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
12230R-1.in silico 241 GAGGAACTGGCCTGGAACTATCTGCCGCTGGATGTCGACCTGGTATCGATGGAGATGCCC 299
12230R-1.IR full 301 AATGCCTTCCGCGATGTGAGTGTGGACGGTGACACTAGCTCGCTGTATCAGGCGGCAGTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12230R-1.in silico 301 AATGCCTTCCGCGATGTGAGTGTGGACGGTGACACTAGCTCGCTGTATCAGGCGGCAGTG 359
12230R-1.IR full 361 GGCCTAGTGCAGCTGCAGCGTCTATACGGTCGCATTCCGAAGATCTACGGAAAAGGAGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12230R-1.in silico 361 GGCCTAGTGCAGCTGCAGCGTCTATACGGTCGCATTCCGAAGATCTACGGAAAAGGAGAG 419
12230R-1.IR full 421 TTTGCGCACAGGGTATGGGAGCACGCCAAGCAGCTGGGCCGGGATGAGCGGACTCTGTAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12230R-1.in silico 421 TTTGCGCACAGGGTATGGGAGCACGCCAAGCAGCTGGGCCGGGATGAGCGGACTCTGTAC 479
12230R-1.IR full 481 AACGGCGACAAGGGTGTCAT 499
|||||||||||||||||| |
12230R-1.in silico 481 AACGGCGACAAGGGTGTCGT 499
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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