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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11642R-3 
 Symbol TRAM  Full Name TRAM 
 CG No CG11642  Old CG No CG11642 
 Synonyms CG11642, CG18830, EG:BACR7A4.5, TRAM 
 Accession No (Link to NCBI)  
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ito S, Ueda T, Ueno A, Nakagawa H, Taniguchi H, Kayukawa N, Miki T.
A genetic screen in Drosophila for regulators of human prostate cancer progression.
Biochem. Biophys. Res. Commun. (2014) 451(4) 548-55 [ PubMed ID = 25117438 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCATTAAACCGGGACTCGGTCG 
 Primer Seq. 3'
aatctagaggtaccAGCTCATGGGATGGTCGGGGA 
 Predicted Fragment Size
500 
 IR fragment full Seq
 
 in silico PCR Fragment
 
 Assemble Data

11642R-3.IR full       1   CATTAAACCGGGACTCGGTCGCAAGA--AGCAACAAGAACCCGCCTATCCTGAGCCACGA 60
                           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
11642R-3.in silico     1   CATTAAACCGGGACTCGGTCGCAAGACCAGCAACAAGAACCCGCCTATCCTGAGCCACGA 60


11642R-3.IR full       61  GTTTGTGATCCAGAACCACGCGGACATCATCTCCTGCGTAGCCATGGTCTTTGTGGTCGG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
11642R-3.in silico     61  GTTTGTGATCCAGAACCACGCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCGG 120


11642R-3.IR full       121 CCTGATGAACGAGTCGACGGCGGCGTTCGCCAGCGCGTTTATATCCCTGCACCACAACGT 180
                           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
11642R-3.in silico     121 CCTGATGAACGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACGT 180


11642R-3.IR full       181 CAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCNATACACCTACATCGCCGG 240
                           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
11642R-3.in silico     181 CAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACCTACATCGCCGG 240


11642R-3.IR full       241 CATCAAGGATTACTGCGCGATATTCTTCTACACGCTGACCTGCATAATCATGCACGCGAT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11642R-3.in silico     241 CATCAAGGATTACTGCGCGATATTCTTCTACACGCTGACCTGCATAATCATGCACGCGAT 300


11642R-3.IR full       301 CATCCAGGAGTTCGTGCTGGACAAGATCAGCAAAAAACTACACCTGTCCAAGTTCAAGCT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11642R-3.in silico     301 CATCCAGGAGTTCGTGCTGGACAAGATCAGCAAAAAACTACACCTGTCCAAGTTCAAGCT 360


11642R-3.IR full       361 GGCCCGCTTCAACGAGTCCGGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11642R-3.in silico     361 GGCCCGCTTCAACGAGTCCGGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGG 420


11642R-3.IR full       421 CGCCCACGTGCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCTT 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11642R-3.in silico     421 CGCCCACGTGCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCTT 480


11642R-3.IR full       481 CCCCGACCATCCCATGANNN 500
                           |||||||||||||||||   
11642R-3.in silico     481 CCCCGACCATCCCATGAGCT 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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