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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
11340R-3 |
| Symbol |
CG11340 |
Full Name |
CG11340 |
| CG No |
CG11340 |
Old CG No |
CG11340 |
| Synonyms |
CG11340 |
| Accession No (Link to NCBI) |
NM_143604.1 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
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Reference
[Please submit your publication]
|
Redhai S, Pilgrim C, Gaspar P, Giesen LV, Lopes T, Riabinina O, Grenier T, Milona A, Chanana B, Swadling JB, Wang YF, Dahalan F, Yuan M, Wilsch-Brauninger M, Lin WH, Dennison N, Capriotti P, Lawniczak MKN, Baines RA, Warnecke T, Windbichler N, Leulier F, Bellono NW, Miguel-Aliaga I.<br> An intestinal zinc sensor regulates food intake and developmental growth.<br> Nature (2020) 580(7802) 263-268
[
PubMed ID = 32269334
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umetsu D, Dunst S, Dahmann C.<br> An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.<br> PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAGTGACCTGCAGTTTACGGTG |
| Primer Seq. 3' |
aatctagaggtaccATGCTGTAGTTGCCCTCCAAG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 AGTGACCTGC AGTTTACGGT GCAGGGTCTG CTGCAGTTGC GATACTTGGA CCCGCGCCTG
0061 GCCTTCTCCA GCTATCTGCC CAACCGAAGG CAGCCCATAA TGGGGGAGTC GGAACTGAAG
0121 AAGATGCTCT GGGTGCCACA TATATTCCTG ACCAACGAAC AGGCCTCCAC TGTCCTGGGC
0181 ACCAGCGCCA AGGACGAGCT GACCAGCATT TATCCGAATG GCACAGTTCT GACATCCACG
0241 CGGCTGCAGG CCACACTGTA CTGCTGGATG AACTTCCAGA AGTTTCCGTT TGATGAGCAG
0301 AAGTGTAAGA CCACATTGGA AAGTTGGATG TACAACACCA CGCTGGTGCA ACTCCACTGG
0361 GAGACCGATA ACCCAGTGAG TTTCGACAAG CAACTTCAGC TGACGGAATA CAACCTGATT
0421 GGGTCGCTGT ACAACGAATC CATCCGAGTG TCCAACGAAT CCTACATGTC CCATGGCTCC
0481 TTGGAGGGCA ACTACAGCAT |
| in silico PCR Fragment |
0001 AGTGACCTGC AGTTTACGGT GCAGGGTCTG CTGCAGTTGC GATACCTGGA CCCGCGCCTG
0061 GCCTTCTCCA GCTATCTGCC TAACCGAAGG CAGCCCATAA TGGGGGAGTC GGAACTGAAG
0121 AAGATGCTCT GGGTGCCACA TATATTCCTG ACCAACGAAC AGGCCTCCAC TGTCCTGGGC
0181 ACCAGCGCCA AGGACGAGCT GACCAGCATT TATCCGAATG GCACAGTTCT TACATCCACG
0241 CGGCTGCAGG CCACACTGTA CTGCTGGATG AACTTCCAGA AGTTTCCGTT TGATGAGCAG
0301 AAGTGTAAGA CCACATTGGA AAGTTGGATG TACAACACCA CGCTGGTGCA ACTCCACTGG
0361 GAGACCGATA ACCCAGTGAG TTTCGACAAG CAACTTCAGC TGACGGAATA CAACCTAATT
0421 GGGTCGCTGT ACAACGAATC CATCCGAGTG TCCAACGAAT CCTACATGTC CCATGGCTCC
0481 TTGGAGGGCA ACTACAGCAT |
| Assemble Data |
<PRE>
11340R-3.IR_full 1 AGTGACCTGCAGTTTACGGTGCAGGGTCTGCTGCAGTTGCGATAC<span class="snp"><tt>T</tt></span>TGGACCCGCGCCTG 60
|||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||
11340R-3.in silico 1 AGTGACCTGCAGTTTACGGTGCAGGGTCTGCTGCAGTTGCGATAC<span class="snp"><tt>C</tt></span>TGGACCCGCGCCTG 60
11340R-3.IR_full 61 GCCTTCTCCAGCTATCTGCC<span class="snp"><tt>C</tt></span>AACCGAAGGCAGCCCATAATGGGGGAGTCGGAACTGAAG 120
||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||
11340R-3.in silico 61 GCCTTCTCCAGCTATCTGCC<span class="snp"><tt>T</tt></span>AACCGAAGGCAGCCCATAATGGGGGAGTCGGAACTGAAG 120
11340R-3.IR_full 121 AAGATGCTCTGGGTGCCACATATATTCCTGACCAACGAACAGGCCTCCACTGTCCTGGGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11340R-3.in silico 121 AAGATGCTCTGGGTGCCACATATATTCCTGACCAACGAACAGGCCTCCACTGTCCTGGGC 180
11340R-3.IR_full 181 ACCAGCGCCAAGGACGAGCTGACCAGCATTTATCCGAATGGCACAGTTCT<span class="snp"><tt>G</tt></span>ACATCCACG 240
||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||
11340R-3.in silico 181 ACCAGCGCCAAGGACGAGCTGACCAGCATTTATCCGAATGGCACAGTTCT<span class="snp"><tt>T</tt></span>ACATCCACG 240
11340R-3.IR_full 241 CGGCTGCAGGCCACACTGTACTGCTGGATGAACTTCCAGAAGTTTCCGTTTGATGAGCAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11340R-3.in silico 241 CGGCTGCAGGCCACACTGTACTGCTGGATGAACTTCCAGAAGTTTCCGTTTGATGAGCAG 300
11340R-3.IR_full 301 AAGTGTAAGACCACATTGGAAAGTTGGATGTACAACACCACGCTGGTGCAACTCCACTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11340R-3.in silico 301 AAGTGTAAGACCACATTGGAAAGTTGGATGTACAACACCACGCTGGTGCAACTCCACTGG 360
11340R-3.IR_full 361 GAGACCGATAACCCAGTGAGTTTCGACAAGCAACTTCAGCTGACGGAATACAACCT<span class="snp"><tt>G</tt></span>ATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||
11340R-3.in silico 361 GAGACCGATAACCCAGTGAGTTTCGACAAGCAACTTCAGCTGACGGAATACAACCT<span class="snp"><tt>A</tt></span>ATT 420
11340R-3.IR_full 421 GGGTCGCTGTACAACGAATCCATCCGAGTGTCCAACGAATCCTACATGTCCCATGGCTCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11340R-3.in silico 421 GGGTCGCTGTACAACGAATCCATCCGAGTGTCCAACGAATCCTACATGTCCCATGGCTCC 480
11340R-3.IR_full 481 TTGGAGGGCAACTACAGCAT 500
||||||||||||||||||||
11340R-3.in silico 481 TTGGAGGGCAACTACAGCAT 500
</PRE>
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_143604.1 |
CG11340-RA (CG11340), mRNA |
| 0 |
0 |
13 |
13 |
24 |
NM_140727.1 |
CG7589-RA (CG7589), mRNA |
| 0 |
0 |
2 |
2 |
9 |
NM_167506.1 |
CG18734-RA, transcript variant A (Fur2), mRNA |
| 0 |
0 |
2 |
2 |
9 |
NM_078644.2 |
CG18734-RD, transcript variant D (Fur2), mRNA |
| 0 |
0 |
2 |
2 |
9 |
NM_206763.1 |
CG18734-RG, transcript variant G (Fur2), mRNA |
| 0 |
0 |
2 |
2 |
9 |
NM_167508.1 |
CG18734-RC, transcript variant C (Fur2), mRNA |
| 0 |
0 |
2 |
2 |
9 |
NM_167510.1 |
CG18734-RF, transcript variant F (Fur2), mRNA |
| 0 |
0 |
2 |
2 |
9 |
NM_167507.1 |
CG18734-RB, transcript variant B (Fur2), mRNA |
| 0 |
0 |
2 |
2 |
9 |
NM_167509.1 |
CG18734-RE, transcript variant E (Fur2), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_140254.2 |
CG14130-RA (CG14130), mRNA |
| 0 |
0 |
1 |
5 |
21 |
NM_131966.1 |
CG6927-RA (CG6927), mRNA |
| 0 |
0 |
1 |
5 |
6 |
NM_142292.1 |
CG14897-RB, transcript variant B (CG14897), mRNA |
| 0 |
0 |
1 |
5 |
6 |
NM_169720.1 |
CG14897-RA, transcript variant A (CG14897), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_140054.2 |
CG3743-RA, transcript variant A (MTF-1), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_168343.1 |
CG3743-RB, transcript variant B (MTF-1), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_132127.2 |
CG4542-RA (CG4542), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_205908.1 |
CG33113-RG, transcript variant G (Rtnl1), mRNA |
| 0 |
0 |
0 |
5 |
4 |
NM_135787.2 |
CG9414-RA (Rep4), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_137831.2 |
CG4752-RA (CG4752), mRNA |
| 0 |
0 |
0 |
5 |
2 |
NM_175972.1 |
CG33113-RD, transcript variant D (Rtnl1), mRNA |
| 0 |
0 |
0 |
5 |
2 |
NM_078711.2 |
CG1424-RA (mst), mRNA |
| 0 |
0 |
0 |
4 |
9 |
NM_143182.2 |
CG5913-RA (CG5913), mRNA |
| 0 |
0 |
0 |
4 |
9 |
NM_167911.1 |
CG2086-RB, transcript variant B (drpr), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_139464.2 |
CG32306-RB, transcript variant B (CG32306), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_206242.1 |
CG32306-RD, transcript variant D (CG32306), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_167948.1 |
CG32306-RA, transcript variant A (CG32306), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_167949.1 |
CG32306-RC, transcript variant C (CG32306), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_001014720.1 |
CG3620-RD, transcript variant D (norpA), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_167008.1 |
CG3620-RB, transcript variant B (norpA), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_001014721.1 |
CG3620-RC, transcript variant C (norpA), mRNA |
|
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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