|
|
| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
|
| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
10198R-1 |
| Symbol |
Nup98 |
Full Name |
Nup98 |
| CG No |
CG10198 |
Old CG No |
CG10198 |
| Synonyms |
Nup96, Nup98-Nup96, CG10198, l(3)95BCd, Nup98/96, CG10201, Nup98 |
| Accession No (Link to NCBI) |
NM_142930.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Mondal BC, Shim J, Evans CJ, Banerjee U.
Pvr expression regulators in equilibrium signal control and maintenance of Drosophila blood progenitors.
Elife (2014) 3 e03626
[
PubMed ID = 25201876
]
[
RRC reference
]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121
[
PubMed ID = 31034473
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAAACCCAGCTTCGGAGCCACT |
| Primer Seq. 3' |
aatctagaggtaccTTGGTGGTTGTAGGCGCCGAC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 AAACCCAGCT TCGGAGCCAC TCCGGCGGCC ACCAGCTTTG GCGGATTCAG CGGCACCACA
0061 ACAACCACTC CGTTTGGCCA GTCGGCATTT GGCAAACCCG CCGCACCGGC CTTTGGAAAC
0121 ACCTCCACCT TTGCCGCCCA ACCCGCGCAG CAGTCACTGT TCGGTGCGGC AGCCACACCA
0181 GCTCAGCCCG CCGGAGGCTT ATTCGGGGCA AACACGTCCA CGGGATTTGG AAGCACTGCC
0241 ACAGCTCAGC CCACGGCTTT TGGAGCCTTC TCGCAGCCGC AACAGACCTC GAACATATTT
0301 GGATCCACCC AGACGGCGGC AAGCACCTCC CTCTTTGGAC AATCGACGCT ACCCGCCTTT
0361 GGAGCCGCCA AGCCGACTAT GACGGCCTTT GGGCAAACAG CTGCTGCTCA GCCCACGGGC
0421 TCTTTGTTTG GCCAACCGGC TGCCGCCACC AGTACAACAG GATTCGGAGG CTTTGGGACG
0481 TCGGCGCCTA CAACCACCAA |
| in silico PCR Fragment |
0001 AAACCCAGCT TCGGAGCCAC TCCGGCGGCC ACCAGCTTTG GCGGATTCAG CGGCACCACA
0061 ACAACCACTC CGTTTGGCCA GTCGGCATTT GGCAAACCCG CCGCACCGGC CTTTGGAAAC
0121 ACCTCCACCT TTGCCGCCCA ACCCGCGCAG CAGTCACTGT TCGGTGCGGC AGCCACACCA
0181 GCTCAGCCCG CCGGAGGCTT ATTCGGGGCA AACACGTCCA CGGGATTTGG AAGCACTGCC
0241 ACAGCTCAGC CCACGGCTTT TGGAGCCTTC TCGCAGCCGC AACAGACCTC GAACATATTT
0301 GGATCCACCC AGACGGCGGC AAGCACCTCC CTCTTTGGAC AATCGACGCT ACCCGCCTTT
0361 GGAGCCGCCA AGCCGACTAT GACGGCCTTT GGGCAAACAG CTGCTGCTCA GCCCACGGGC
0421 TCTTTGTTTG GCCAACCGGC TGCCGCCACC AGTACAACAG GATTCGGAGG CTTTGGGACG
0481 TCGGCGCCTA CAACCACCAA |
| Assemble Data |
10198R-1.IR_full 1 AAACCCAGCTTCGGAGCCACTCCGGCGGCCACCAGCTTTGGCGGATTCAGCGGCACCACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10198R-1.in silico 1 AAACCCAGCTTCGGAGCCACTCCGGCGGCCACCAGCTTTGGCGGATTCAGCGGCACCACA 60
10198R-1.IR_full 61 ACAACCACTCCGTTTGGCCAGTCGGCATTTGGCAAACCCGCCGCACCGGCCTTTGGAAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10198R-1.in silico 61 ACAACCACTCCGTTTGGCCAGTCGGCATTTGGCAAACCCGCCGCACCGGCCTTTGGAAAC 120
10198R-1.IR_full 121 ACCTCCACCTTTGCCGCCCAACCCGCGCAGCAGTCACTGTTCGGTGCGGCAGCCACACCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10198R-1.in silico 121 ACCTCCACCTTTGCCGCCCAACCCGCGCAGCAGTCACTGTTCGGTGCGGCAGCCACACCA 180
10198R-1.IR_full 181 GCTCAGCCCGCCGGAGGCTTATTCGGGGCAAACACGTCCACGGGATTTGGAAGCACTGCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10198R-1.in silico 181 GCTCAGCCCGCCGGAGGCTTATTCGGGGCAAACACGTCCACGGGATTTGGAAGCACTGCC 240
10198R-1.IR_full 241 ACAGCTCAGCCCACGGCTTTTGGAGCCTTCTCGCAGCCGCAACAGACCTCGAACATATTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10198R-1.in silico 241 ACAGCTCAGCCCACGGCTTTTGGAGCCTTCTCGCAGCCGCAACAGACCTCGAACATATTT 300
10198R-1.IR_full 301 GGATCCACCCAGACGGCGGCAAGCACCTCCCTCTTTGGACAATCGACGCTACCCGCCTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10198R-1.in silico 301 GGATCCACCCAGACGGCGGCAAGCACCTCCCTCTTTGGACAATCGACGCTACCCGCCTTT 360
10198R-1.IR_full 361 GGAGCCGCCAAGCCGACTATGACGGCCTTTGGGCAAACAGCTGCTGCTCAGCCCACGGGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10198R-1.in silico 361 GGAGCCGCCAAGCCGACTATGACGGCCTTTGGGCAAACAGCTGCTGCTCAGCCCACGGGC 420
10198R-1.IR_full 421 TCTTTGTTTGGCCAACCGGCTGCCGCCACCAGTACAACAGGATTCGGAGGCTTTGGGACG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10198R-1.in silico 421 TCTTTGTTTGGCCAACCGGCTGCCGCCACCAGTACAACAGGATTCGGAGGCTTTGGGACG 480
10198R-1.IR_full 481 TCGGCGCCTACAACCACCAA 500
||||||||||||||||||||
10198R-1.in silico 481 TCGGCGCCTACAACCACCAA 500
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100.41 |
484 |
4 |
8 |
23 |
NM_142930.2 |
CG10198-RA (Nup98), mRNA |
| 0 |
0 |
2 |
4 |
5 |
NM_079512.2 |
CG2899-RA (ksr), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_142057.2 |
CG9307-RA (CG9307), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_143048.1 |
CG11089-RA (CG11089), mRNA |
| 0 |
0 |
1 |
8 |
6 |
NM_078537.2 |
CG10966-RA, transcript variant A (rdgA), mRNA |
| 0 |
0 |
1 |
8 |
6 |
NM_001042799.1 |
CG10966-RB, transcript variant B (rdgA), mRNA |
| 0 |
0 |
1 |
6 |
5 |
NM_168413.1 |
CG32062-RB, transcript variant B (CG32062), mRNA |
| 0 |
0 |
1 |
6 |
5 |
NM_168412.1 |
CG32062-RD, transcript variant D (CG32062), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_001014541.1 |
CG8201-RM, transcript variant M (par-1), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_206173.2 |
CG8201-RC, transcript variant C (par-1), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_206172.1 |
CG8201-RG, transcript variant G (par-1), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_206174.2 |
CG8201-RE, transcript variant E (par-1), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_206176.2 |
CG8201-RD, transcript variant D (par-1), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_206175.2 |
CG8201-RF, transcript variant F (par-1), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_165608.1 |
CG30360-RA, transcript variant A (CG30360), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_206057.1 |
CG30360-RB, transcript variant B (CG30360), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NR_003116.1 |
CR41440, mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_142632.2 |
CG4288-RB, transcript variant B (CG4288), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_169898.1 |
CG4288-RA, transcript variant A (CG4288), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_167960.1 |
CG1244-RD, transcript variant D (CG1244), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_167962.1 |
CG1244-RF, transcript variant F (CG1244), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_167961.1 |
CG1244-RE, transcript variant E (CG1244), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_167958.1 |
CG1244-RB, transcript variant B (CG1244), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_139476.1 |
CG1244-RA, transcript variant A (CG1244), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_167959.1 |
CG1244-RC, transcript variant C (CG1244), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_140460.1 |
CG13473-RA (CG13473), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_140468.2 |
CG9425-RA, transcript variant A (CG9425), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_206362.1 |
CG9425-RB, transcript variant B (CG9425), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_141178.3 |
CG12581-RA, transcript variant A (CG12581), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_164313.1 |
CG12581-RB, transcript variant B (CG12581), mRNA |
|
|
|
