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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9948R-2 
 Symbol CG9948  Full Name CG9948 
 CG No CG9948  Old CG No CG9948 
 Synonyms CG9948 
 Accession No (Link to NCBI) NM_139806.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees late pupal lethal 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgCATAGCCGAGATGATGGGCTG 
 Primer Seq. 3' 
aatctagaggtaccCGGACTGATTACTCAAGGCAC 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 CATAGCCGAG ATGATGGGCT GTGATGTGGA CTTCTGCCTG ATGCGCTGGA ACAATCTGCA 
0061 CTATCAGTTT CGCAAGGAGT TTCGCCGCGC GGACACCAGT GGATCCACCT GGCCGTACCT 
0121 GGAACGCCTG CGATTTTTGG CCGAGATCCA GCCGCCCTCC AAAGTGAAAA CCAAACCCAA 
0181 AACAAACAAA CAGGAGGCGA CCATCCAGAC GGAAAACTCC TGTGCAATTT TTGTGGGACA 
0241 CTTTTGAGGA TGGGGATGTT CCACAGCAGT CGAGTACGTT CATAATCGAG GAGGTCATCG 
0301 AGGAGCCCAG TGAACAGATC ATCCAAGAGG AAATCATCTA CGAGGAACAA GAGCCCGCTG 
0361 AAATAATCTC GCCCAGAAGC AGCTTTCTCC AGATGGACCA AATACTGGCC CAACTAAAGG 
0421 AACCGCAGCG GAGAAGGGCA GAACGAAGGA TTACAGCATT TCTGCTCAAG TGCCAGCTGC 
0481 GTGCCTTGAG TAATCAGTCC G 
 in silico PCR Fragment 
0001 CATAGCCGAG ATGATGGGCT GTGATGTGGA CTTCTGCCTG ATGCGCTGGA ACAATCTGCA 
0061 CTATCAGTTT CGCAAGGAGT TTCGCCGCGC GGACACCAGT GGATCCACCT GGCCGTACCT 
0121 GGAACGCCTG CGATTTTTGG CCGAGATCCA GCCGCCCTCC AAAGTGAAAA CCAAACCCAA 
0181 AACAAACAAA CAGGAGGCGA CCATCCAGAC GG-AAACTCC TGTGCAATTT TTGTGGGACA 
0241 CTTTTGAGGA TGGGGATGTT CCACAGCAGT CGAGTACGTT CATAATCGAG GAGGTCATCG 
0301 AGGAGCCCAG TGAACAGATC ATCCAAGAGG AAATCATCTA CGAGGAACAA GAGCCCGCTG 
0361 AAATAATCTC GCCCAGAAGC AGCTTTCTCC AGATGGACCA AATACTGGCC CAACTAAAGG 
0421 AACCGCAGCG GAGAAGGGCA GAACGAAGGA TTACAGCATT TCTGCTCAAG TGCCAGCTGC 
0481 GTGCCTTGAG TAATCAGTCC G 
 Assemble Data 
<PRE>

9948R-2.IR_full       1   CATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCTGGAACAATCTGCA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9948R-2.in silico     1   CATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCTGGAACAATCTGCA 60


9948R-2.IR_full       61  CTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACCAGTGGATCCACCTGGCCGTACCT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9948R-2.in silico     61  CTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACCAGTGGATCCACCTGGCCGTACCT 120


9948R-2.IR_full       121 GGAACGCCTGCGATTTTTGGCCGAGATCCAGCCGCCCTCCAAAGTGAAAACCAAACCCAA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9948R-2.in silico     121 GGAACGCCTGCGATTTTTGGCCGAGATCCAGCCGCCCTCCAAAGTGAAAACCAAACCCAA 180


9948R-2.IR_full       181 AACAAACAAACAGGAGGCGACCATCCAGACGG<span class="snp"><tt>A</tt></span>AAACTCCTGTGCAATTTTTGTGGGACA 240
                          ||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||
9948R-2.in silico     181 AACAAACAAACAGGAGGCGACCATCCAGACGG<span class="snp"><tt>-</tt></span>AAACTCCTGTGCAATTTTTGTGGGACA 240


9948R-2.IR_full       241 CTTTTGAGGATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCATCG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9948R-2.in silico     241 CTTTTGAGGATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCATCG 300


9948R-2.IR_full       301 AGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAACAAGAGCCCGCTG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9948R-2.in silico     301 AGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAACAAGAGCCCGCTG 360


9948R-2.IR_full       361 AAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGACCAAATACTGGCCCAACTAAAGG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9948R-2.in silico     361 AAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGACCAAATACTGGCCCAACTAAAGG 420


9948R-2.IR_full       421 AACCGCAGCGGAGAAGGGCAGAACGAAGGATTACAGCATTTCTGCTCAAGTGCCAGCTGC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9948R-2.in silico     421 AACCGCAGCGGAGAAGGGCAGAACGAAGGATTACAGCATTTCTGCTCAAGTGCCAGCTGC 480


9948R-2.IR_full       481 GTGCCTTGAGTAATCAGTCCG 501
                          |||||||||||||||||||||
9948R-2.in silico     481 GTGCCTTGAGTAATCAGTCCG 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_139806.1  CG9948-RA (CG9948), mRNA 
0.2   1  3  3  2  NM_137750.1  CG10321-RA (CG10321), mRNA 
0   0  4  2  4  NM_141040.1  CG7752-RA (Z4), mRNA 
0   0  3  2  3  NM_134727.2  CG4577-RA (CG4577), mRNA 
0   0  2  5  17  NM_143769.3  CG9432-RA, transcript variant A (l(2)01289), mRNA 
0   0  2  5  4  NM_132590.1  CG2540-RA (CG2540), mRNA 
0   0  2  4  6  NM_139646.1  CG12607-RB (CG12607), mRNA 
0   0  2  3  8  NM_168667.1  CG32159-RB (CG32159), mRNA 
0   0  2  3  6  NM_001032257.1  CG7964-RA, transcript variant A (Menl-1), mRNA 
0   0  2  3  6  NM_001032253.1  CG7969-RB, transcript variant B (Menl-2), mRNA 
0   0  2  3  5  NM_001032252.1  CG7969-RC, transcript variant C (Menl-2), mRNA 
0   0  2  3  5  NM_001032254.1  CG7969-RA, transcript variant A (Menl-2), mRNA 
0   0  2  3  4  NM_135885.1  CG15277-RA (CG15277), mRNA 
0   0  2  3  2  NM_135162.1  CG13983-RA (CG13983), mRNA 
0   0  2  2  2  NM_138180.1  CG13881-RA (CG13881), mRNA 
0   0  1  7  4  NM_141170.2  CG11115-RA (Ssl1), mRNA 
0   0  1  4  3  NM_138238.1  CG13913-RA (CG13913), mRNA 
0   0  1  3  7  NM_078847.2  CG7595-RB, transcript variant B (ck), mRNA 
0   0  1  3  7  NM_165099.1  CG7595-RA, transcript variant A (ck), mRNA 
0   0  1  3  5  NM_132320.2  CG12124-RA (CG12124), mRNA 
0   0  1  3  2  NM_170195.1  CG31111-RA (CG31111), mRNA 
0   0  1  2  11  NM_165485.1  CG9432-RB, transcript variant B (l(2)01289), mRNA 
0   0  1  2  11  NM_001043010.1  CG9432-RD, transcript variant D (l(2)01289), mRNA 
0   0  1  2  6  NM_078822.2  CG6320-RA, transcript variant A (Ca-beta), mRNA 
0   0  1  2  6  NM_140883.1  CG8780-RA (tey), mRNA 
0   0  1  2  6  NM_205962.1  CG6320-RD, transcript variant D (Ca-beta), mRNA 
0   0  1  2  6  NM_205963.1  CG6320-RC, transcript variant C (Ca-beta), mRNA 
0   0  1  2  5  NM_132037.2  CG12239-RA (CG12239), mRNA 
0   0  1  2  5  NM_001043009.1  CG9432-RE, transcript variant E (l(2)01289), mRNA 
0   0  1  2  4  NM_164959.1  CG6320-RB, transcript variant B (Ca-beta), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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