| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
9668R-2 |
| Symbol |
Rh4 |
Full Name |
Rhodopsin 4 |
| CG No |
CG9668 |
Old CG No |
CG9668 |
| Synonyms |
rh4, CG9668, Rh, FBgn0003250, DMELRH4, Dm Rh4, RH4, unnamed, Rh4 |
| Accession No (Link to NCBI) |
NM_057353.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Xu C, Franklin B, Tang HW, Regimbald-Dumas Y, Hu Y, Ramos J, Bosch JA, Villalta C, He X, Perrimon N.<br> An in vivo RNAi screen uncovers the role of AdoR signaling and adenosine deaminase in controlling intestinal stem cell activity.<br> Proc Natl Acad Sci U S A (2020) 117(1) 464-471
[
PubMed ID = 31852821
]
[
RRC reference
]
Lesch C, Jo J, Wu Y, Fish GS, Galko MJ.<br> A targeted UAS-RNAi screen in Drosophila larvae identifies wound closure genes regulating distinct cellular processes.<br> Genetics (2010) 186(3) 943-57
[
PubMed ID = 20813879
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCATGCACTACATGCTGGGCGT |
| Primer Seq. 3' |
aatctagaggtaccCCACAAACAACCGGGTGTCAA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 CATGCACTAC ATGCTGGGCG TCTTCTACAT ATTTCTCTTC TGCGCCTCGA CAGTGGGTAA
0061 TGGCATGGTC ATCTGGATCT TCAGCACATC CAAGTCGCTG AGGACACCAT CCAATATGTT
0121 CGTGCTGAAT CTGGCCGTCT TCGATCTGAT CATGTGCCTC AAGGCGCCGA TCTTCATCTA
0181 CAACAGCTTC CATCGAGGAT TCGCCCTGGG CAATACCTGG TGCCAGATAT TCGCCTCCAT
0241 TGGCTCCTAT TCGGGTATTG GTGCTGGTAT GACGAACGCG GCCATAGGAT ACGATCGATA
0301 CAATGTGATC ACCAAGCCCA TGAACCGCAA CATGACCTTC ACCAAGGCGG TGATAATGAA
0361 TATAATCATC TGGTTGTACT GCACACCGTG GGTTGTCCTG CCGCTAACCC AGTTCTGGGA
0421 TCGATTCGTG CCAGAGGGCT ACCTCACGTC CTGCTCCTTC GACTATCTTT CGGACAACTT
0481 TGACACCCGG TTGTTTGTGG |
| in silico PCR Fragment |
0001 CATGCACTAC ATGCTGGGCG TCTTCTACAT ATTTCTCTTC TGCGCCTCGA CAGTGGGTAA
0061 TGGCATGGTC ATCTGGATCT TCAGCACATC CAAGTCGCTG AGGACACCAT CCAATATGTT
0121 CGTGCTGAAT CTGGCCGTCT TCGATCTGAT CATGTGCCTC AAGGCGCCGA TCTTCATCTA
0181 CAACAGCTTC CATCGAGGAT TCGCCCTGGG CAATACCTGG TGCCAGATAT TCGCCTCCAT
0241 TGGCTCCTAT TCGGGTATTG GTGCTGGTAT GACGAACGCG GCCATAGGAT ACGATCGATA
0301 CAATGTGATC ACCAAGCCCA TGAACCGCAA CATGACCTTC ACCAAGGCGG TGATAATGAA
0361 TATAATCATC TGGTTGTACT GCACACCGTG GGTTGTCCTG CCGCTAACCC AGTTCTGGGA
0421 TCGATTCGTG CCAGAGGGCT ACCTCACGTC CTGCTCCTTC GACTATCTTT CGGACAACTT
0481 TGACACCCGG TTGTTTGTGG |
| Assemble Data |
<PRE>
9668R-2.IR_full 1 CATGCACTACATGCTGGGCGTCTTCTACATATTTCTCTTCTGCGCCTCGACAGTGGGTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9668R-2.in silico 1 CATGCACTACATGCTGGGCGTCTTCTACATATTTCTCTTCTGCGCCTCGACAGTGGGTAA 60
9668R-2.IR_full 61 TGGCATGGTCATCTGGATCTTCAGCACATCCAAGTCGCTGAGGACACCATCCAATATGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9668R-2.in silico 61 TGGCATGGTCATCTGGATCTTCAGCACATCCAAGTCGCTGAGGACACCATCCAATATGTT 120
9668R-2.IR_full 121 CGTGCTGAATCTGGCCGTCTTCGATCTGATCATGTGCCTCAAGGCGCCGATCTTCATCTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9668R-2.in silico 121 CGTGCTGAATCTGGCCGTCTTCGATCTGATCATGTGCCTCAAGGCGCCGATCTTCATCTA 180
9668R-2.IR_full 181 CAACAGCTTCCATCGAGGATTCGCCCTGGGCAATACCTGGTGCCAGATATTCGCCTCCAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9668R-2.in silico 181 CAACAGCTTCCATCGAGGATTCGCCCTGGGCAATACCTGGTGCCAGATATTCGCCTCCAT 240
9668R-2.IR_full 241 TGGCTCCTATTCGGGTATTGGTGCTGGTATGACGAACGCGGCCATAGGATACGATCGATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9668R-2.in silico 241 TGGCTCCTATTCGGGTATTGGTGCTGGTATGACGAACGCGGCCATAGGATACGATCGATA 300
9668R-2.IR_full 301 CAATGTGATCACCAAGCCCATGAACCGCAACATGACCTTCACCAAGGCGGTGATAATGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9668R-2.in silico 301 CAATGTGATCACCAAGCCCATGAACCGCAACATGACCTTCACCAAGGCGGTGATAATGAA 360
9668R-2.IR_full 361 TATAATCATCTGGTTGTACTGCACACCGTGGGTTGTCCTGCCGCTAACCCAGTTCTGGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9668R-2.in silico 361 TATAATCATCTGGTTGTACTGCACACCGTGGGTTGTCCTGCCGCTAACCCAGTTCTGGGA 420
9668R-2.IR_full 421 TCGATTCGTGCCAGAGGGCTACCTCACGTCCTGCTCCTTCGACTATCTTTCGGACAACTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9668R-2.in silico 421 TCGATTCGTGCCAGAGGGCTACCTCACGTCCTGCTCCTTCGACTATCTTTCGGACAACTT 480
9668R-2.IR_full 481 TGACACCCGGTTGTTTGTGG 500
||||||||||||||||||||
9668R-2.in silico 481 TGACACCCGGTTGTTTGTGG 500
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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