National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
Notice:

Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9450R-1 
 Symbol tud  Full Name tudor 
 CG No CG9450  Old CG No CG9450 
 Synonyms tu, CG9450, tud, TUD 
 Accession No (Link to NCBI) NM_057425.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTGAAGGTCTACGGCCACGTTA 
 Primer Seq. 3' 
aatctagaggtaccGAGCTCAAAATCCTTCCAGCG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 TGAAGGTCTA CGGCCACGTT AACCGAGACG CCGCCTCCCT GATCAGCGAA CGAATCAGGA 
0061 ATCTGTTGCC CACATGCTTT GCCATTGAGC CCAGTTGGTC CGTGGAGCGC CAACAGGCTC 
0121 TCCTCATACC CGGCACGTTT TGCATATTCA AGAATATCAA TGGCCCGGCT CCTGGTGATG 
0181 TGGAGTACAG GCGGATACGT GTGGTCAGTG CAGACCTGGA GGGTCAGTCG ATGCGGGCGG 
0241 AGATCGATTT CGTGGACTTT GGCTATAAGC GTACTGTAGA TAGTCATGAT TTAATGTTCC 
0301 CCAAGCAGCC CAAGCTGCTT CAGAACATTC CCCTGCACTG CTTCCAGTAC ATTGTGCTGG 
0361 GAATCTGCTC CGAGTGGGAT CAGACCGATC TGGCTGAGGT TCGGCGGCTG GTTGTCAACC 
0421 ATATCGTTAA AATCACTGTG GAACCTACAC AAATCTGTGA CCAAAAGTTT GCCAGTCTGC 
0481 GCTGGAAGGA TTTTGAGCTC  
 in silico PCR Fragment 
0001 TGAAGGTCTA CGGCCACGTT AACCGAGACG CCGCCTCCCT GATCAGCGAA CGAATCAGGA 
0061 ATCTGTTGCC CACATGCTTT GCCATTGAGC CCAGTTGGTC CGTGGAGCGC CAACAGGCTC 
0121 TCCTCATACC CGGCACGTTT TGCATATTCA AGAATATCAA TGGCCCGGCT CCTGGTGATG 
0181 TGGAGTACAG GCGGATACGT GTGGTCAGTG CAGACCTGGA GGGTCAGTCG ATGCGGGCGG 
0241 AGATCGATTT CGTGGACTTT GGCTATAAGC GTACTGTAGA TAGTCATGAT TTAATGTTCC 
0301 CCAAGCAGCC CAAGCTGCTT CAGAACATTC CCCTGCACTG CTTCCAGTAC ATTGTGCTGG 
0361 GAATCTGCTC CGAGTGGGAT CAGACCGATC TGGCTGAGGT TCGGCGGCTG GTTGTCAACC 
0421 AGATCGTTAA AATCACTGTG GAACCTACAC AAATCTGTGA CCAAAAGTTT GCCAGTCTGC 
0481 GCTGGAAGGA TTTTGAGCTC  
 Assemble Data 
<PRE>

9450R-1.IR_full       1   TGAAGGTCTACGGCCACGTTAACCGAGACGCCGCCTCCCTGATCAGCGAACGAATCAGGA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9450R-1.in silico     1   TGAAGGTCTACGGCCACGTTAACCGAGACGCCGCCTCCCTGATCAGCGAACGAATCAGGA 60


9450R-1.IR_full       61  ATCTGTTGCCCACATGCTTTGCCATTGAGCCCAGTTGGTCCGTGGAGCGCCAACAGGCTC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9450R-1.in silico     61  ATCTGTTGCCCACATGCTTTGCCATTGAGCCCAGTTGGTCCGTGGAGCGCCAACAGGCTC 120


9450R-1.IR_full       121 TCCTCATACCCGGCACGTTTTGCATATTCAAGAATATCAATGGCCCGGCTCCTGGTGATG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9450R-1.in silico     121 TCCTCATACCCGGCACGTTTTGCATATTCAAGAATATCAATGGCCCGGCTCCTGGTGATG 180


9450R-1.IR_full       181 TGGAGTACAGGCGGATACGTGTGGTCAGTGCAGACCTGGAGGGTCAGTCGATGCGGGCGG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9450R-1.in silico     181 TGGAGTACAGGCGGATACGTGTGGTCAGTGCAGACCTGGAGGGTCAGTCGATGCGGGCGG 240


9450R-1.IR_full       241 AGATCGATTTCGTGGACTTTGGCTATAAGCGTACTGTAGATAGTCATGATTTAATGTTCC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9450R-1.in silico     241 AGATCGATTTCGTGGACTTTGGCTATAAGCGTACTGTAGATAGTCATGATTTAATGTTCC 300


9450R-1.IR_full       301 CCAAGCAGCCCAAGCTGCTTCAGAACATTCCCCTGCACTGCTTCCAGTACATTGTGCTGG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9450R-1.in silico     301 CCAAGCAGCCCAAGCTGCTTCAGAACATTCCCCTGCACTGCTTCCAGTACATTGTGCTGG 360


9450R-1.IR_full       361 GAATCTGCTCCGAGTGGGATCAGACCGATCTGGCTGAGGTTCGGCGGCTGGTTGTCAACC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9450R-1.in silico     361 GAATCTGCTCCGAGTGGGATCAGACCGATCTGGCTGAGGTTCGGCGGCTGGTTGTCAACC 420


9450R-1.IR_full       421 A<span class="snp"><tt>T</tt></span>ATCGTTAAAATCACTGTGGAACCTACACAAATCTGTGACCAAAAGTTTGCCAGTCTGC 480
                          |<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9450R-1.in silico     421 A<span class="snp"><tt>G</tt></span>ATCGTTAAAATCACTGTGGAACCTACACAAATCTGTGACCAAAAGTTTGCCAGTCTGC 480


9450R-1.IR_full       481 GCTGGAAGGATTTTGAGCTC 500
                          ||||||||||||||||||||
9450R-1.in silico     481 GCTGGAAGGATTTTGAGCTC 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_057425.2  CG9450-RA (tud), mRNA 
0   0  8  2  2  NM_134812.2  CG7074-RA (mio), mRNA 
0   0  3  2  2  NM_135723.2  CG5435-RA (CG5435), mRNA 
0   0  3  2  2  NM_135722.2  CG6388-RA (CG6388), mRNA 
0   0  2  3  8  NM_133166.2  CG5576-RA (imd), mRNA 
0   0  2  2  4  NM_141549.1  CG8007-RB, transcript variant B (CG8007), mRNA 
0   0  1  4  2  NM_164809.3  CG13383-RB (CSN8), mRNA 
0   0  1  2  3  NM_137813.1  CG30277-RA (Oatp58Da), mRNA 
0   0  1  2  3  NM_080125.2  CG4399-RB (east), mRNA 
0   0  1  2  3  NM_176294.2  CG33171-RE, transcript variant E (CG33171), mRNA 
0   0  1  2  3  NM_176293.1  CG33171-RC, transcript variant C (CG33171), mRNA 
0   0  1  2  2  NM_132653.1  CG1660-RA (Tim9a), mRNA 
0   0  1  2  2  NM_134665.2  CG3345-RA (CG3345), mRNA 
0   0  1  2  2  NM_080249.3  CG1487-RA (krz), mRNA 
0   0  0  5  4  NM_164539.1  CG31956-RA (pgant4), mRNA 
0   0  0  5  3  NM_080139.3  CG8171-RA (dup), mRNA 
0   0  0  4  6  NM_169502.1  CG8774-RB, transcript variant B (CG8774), mRNA 
0   0  0  4  6  NM_142017.2  CG8774-RA, transcript variant A (CG8774), mRNA 
0   0  0  4  4  NM_141965.1  CG14395-RA (CG14395), mRNA 
0   0  0  4  3  NM_001015254.1  CG17168-PA.3 (CG17168), mRNA 
0   0  0  3  8  NM_135462.2  CG13116-RA (CG13116), mRNA 
0   0  0  3  6  NM_165058.3  CG31731-RA, transcript variant A (CG31731), mRNA 
0   0  0  3  6  NM_001042895.1  CG31731-RB, transcript variant B (CG31731), mRNA 
0   0  0  3  6  NM_139367.3  CG7864-RA (CG7864), mRNA 
0   0  0  3  6  NM_079476.2  CG5683-RB, transcript variant B (Aef1), mRNA 
0   0  0  3  6  NM_168904.2  CG5683-RC, transcript variant C (Aef1), mRNA 
0   0  0  3  6  NM_168903.2  CG5683-RA, transcript variant A (Aef1), mRNA 
0   0  0  3  5  NM_139680.1  CG17150-RA, transcript variant A (CG17150), mRNA 
0   0  0  3  4  NM_168677.1  CG32164-RA (CG32164), mRNA 
0   0  0  3  4  NM_136434.2  CG1669-RA (kappaB-Ras), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
 Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.