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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9363R-3 
 Symbol CG9363  Full Name CG9363 
 CG No CG9363  Old CG No CG9363 
 Synonyms CG9363 
 Accession No (Link to NCBI) NM_141638.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTACTCGTATTGGCGCAGCTCG 
 Primer Seq. 3' 
aatctagaggtaccCTTCGGGCATTGAACACCTGA 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 TACTCGTATT GGCGCAgcTC GTGCTCCTGG CGCGTgcgCA GTTGCGATGA ACCTGAAGGA 
0061 GATACCCTAC GACATCAAGC CGATCAGCCT GATCAAATCC GGTGGCGAGC AGCACTGCAA 
0121 TGAGTACCGC GAGGTGAATC CAATGGAGCA GGTGCCCGCC CTACAGATTG ATGGACACAC 
0181 CCTCATCGAA TCGGTAGCCA TAATGCACTA CCTGGAGGAA ACACGTCCCC AGCGACCACT 
0241 CCTGCCACAG GACGTCCACA AGCGGGCCAA GGTGCGCGAA ATAGTCGAGA TCATTTGCTC 
0301 TGGCATCCAG CCCCTGCAGA ACCTCATCGT GCTCATCCAT GTGGGCGAGG AGAAGAAGAA 
0361 GGAGTGGGCC CAGCACTGGA TTACACGAGG CTTCCGGGCG GTTGAGAAGG CGCTGTCCAC 
0421 TTCGGCCGGC AAATATTGCG TGGGCGATGA GATCTCCATG GCGGACTGCT GCCTCGTACC 
0481 TCAGGTGTTC AATGcNCGAA G 
 in silico PCR Fragment 
0001 TACTCGTATT GGCGCAGCTC GTGCTCCTGG CGCGTGCGCA -TTGCGATGA ACCTGAAGGA 
0061 GATACCCTAC GACATCAAGC CGATCAGCCT GATCAAATCC GGTGGCGAGC AGCACTGCAA 
0121 TGAGTACCGC GAGGTGAATC CAATGGAGCA GGTGCCCGCC CTACAGATTG ATGGACACAC 
0181 CCTCATCGAA TCGGTAGCCA TAATGCACTA CCTGGAGGAA ACACGTCCCC AGCGACCACT 
0241 CCTGCCACAG GACGTCCACA AGCGGGCCAA GGTGCGCGAA ATAGTCGAGA TCATTTGCTC 
0301 TGGCATCCAG CCCCTGCAGA ACCTCATCGT GCTCATCCAT GTGGGCGAGG AGAAGAAGAA 
0361 GGAGTGGGCC CAGCACTGGA TTACACGAGG CTTCCGGGCG GTTGAGAAGG CGCTGTCCAC 
0421 TTCGGCCGGC AAATATTGCG TGGGCGATGA GATCTCCATG GCGGACTGCT GCCTCGTACC 
0481 TCAGGTGTTC AATGCCCGAA G 
 Assemble Data 
<PRE>

9363R-3.IR_full       1   TACTCGTATTGGCGCAGCTCGTGCTCCTGGCGCGTGCGCA<span class="snp"><tt>G</tt></span>TTGCGATGAACCTGAAGGA 60
                          ||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||
9363R-3.in silico     1   TACTCGTATTGGCGCAGCTCGTGCTCCTGGCGCGTGCGCA<span class="snp"><tt>-</tt></span>TTGCGATGAACCTGAAGGA 60


9363R-3.IR_full       61  GATACCCTACGACATCAAGCCGATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9363R-3.in silico     61  GATACCCTACGACATCAAGCCGATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAA 120


9363R-3.IR_full       121 TGAGTACCGCGAGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACAC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9363R-3.in silico     121 TGAGTACCGCGAGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACAC 180


9363R-3.IR_full       181 CCTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCAGCGACCACT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9363R-3.in silico     181 CCTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCAGCGACCACT 240


9363R-3.IR_full       241 CCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAATAGTCGAGATCATTTGCTC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9363R-3.in silico     241 CCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAATAGTCGAGATCATTTGCTC 300


9363R-3.IR_full       301 TGGCATCCAGCCCCTGCAGAACCTCATCGTGCTCATCCATGTGGGCGAGGAGAAGAAGAA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9363R-3.in silico     301 TGGCATCCAGCCCCTGCAGAACCTCATCGTGCTCATCCATGTGGGCGAGGAGAAGAAGAA 360


9363R-3.IR_full       361 GGAGTGGGCCCAGCACTGGATTACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCAC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9363R-3.in silico     361 GGAGTGGGCCCAGCACTGGATTACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCAC 420


9363R-3.IR_full       421 TTCGGCCGGCAAATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9363R-3.in silico     421 TTCGGCCGGCAAATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACC 480


9363R-3.IR_full       481 TCAGGTGTTCAATGC<span class="snp"><tt>N</tt></span>CGAAG 501
                          |||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||
9363R-3.in silico     481 TCAGGTGTTCAATGC<span class="snp"><tt>C</tt></span>CGAAG 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_169286.1  CG9363-RB, transcript variant B (CG9363), mRNA 
100   482  0  0  0  NM_206468.1  CG9363-RC, transcript variant C (CG9363), mRNA 
100   482  0  0  0  NM_141638.2  CG9363-RA, transcript variant A (CG9363), mRNA 
0   0  8  24  36  NM_141637.2  CG9362-RA (CG9362), mRNA 
0   0  3  3  6  NM_141998.1  CG11670-RA (CG11670), mRNA 
0   0  3  3  3  NM_139680.1  CG17150-RA, transcript variant A (CG17150), mRNA 
0   0  2  4  5  NM_057282.3  CG4087-RA (RpLP1), mRNA 
0   0  2  3  4  NM_206740.1  CG16952-RC, transcript variant C (CG16952), mRNA 
0   0  2  3  4  NM_132857.2  CG16952-RA, transcript variant A (CG16952), mRNA 
0   0  2  3  4  NM_206741.1  CG16952-RB, transcript variant B (CG16952), mRNA 
0   0  2  2  8  NM_001014624.1  CG33555-RC, transcript variant C (btsz), mRNA 
0   0  2  2  7  NM_001014623.1  CG33555-RD, transcript variant D (btsz), mRNA 
0   0  2  2  7  NM_140045.2  CG4447-RA (CG4447), mRNA 
0   0  2  2  4  NM_137384.2  CG4878-RB, transcript variant B (eIF3-S9), mRNA 
0   0  2  2  4  NM_166239.2  CG4878-RA, transcript variant A (eIF3-S9), mRNA 
0   0  2  2  2  NM_132670.2  CG32633-RA (CG32633), mRNA 
0   0  1  5  5  NM_136089.2  CG17492-RA (mib2), mRNA 
0   0  1  4  5  NM_142710.2  CG16791-RA (CG16791), mRNA 
0   0  1  4  3  NM_137151.2  CG10212-RA (SMC2), mRNA 
0   0  1  3  6  NM_078577.2  CG4147-RB, transcript variant B (Hsc70-3), mRNA 
0   0  1  3  6  NM_167308.1  CG4147-RD, transcript variant D (Hsc70-3), mRNA 
0   0  1  3  6  NM_167306.1  CG4147-RA, transcript variant A (Hsc70-3), mRNA 
0   0  1  3  6  NM_167307.1  CG4147-RC, transcript variant C (Hsc70-3), mRNA 
0   0  1  3  4  NM_168646.1  CG32156-RC, transcript variant C (Mbs), mRNA 
0   0  1  3  4  NM_057797.2  CG10387-RA (tos), mRNA 
0   0  1  3  3  NM_168648.1  CG32156-RB, transcript variant B (Mbs), mRNA 
0   0  1  3  3  NM_168647.1  CG32156-RA, transcript variant A (Mbs), mRNA 
0   0  1  2  16  NM_001032051.1  CG33715-RD, transcript variant D (Msp-300), mRNA 
0   0  1  2  9  NM_001032053.1  CG33715-RB, transcript variant B (Msp-300), mRNA 
0   0  1  2  7  NM_206135.1  CG4918-RB, transcript variant B (RpLP2), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway dme00350 : Tyrosine metabolism
dme01100 : Metabolic pathways

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