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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9362R-3 
 Symbol CG9362  Full Name CG9362 
 CG No CG9362  Old CG No CG9362 
 Synonyms CG9362 
 Accession No (Link to NCBI) NM_141637.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgATGGCTTCTGCTACCCAATTG 
 Primer Seq. 3' 
aatctagaggtaccCCTCGAGAAATCCAGTGTTGT 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 ATGGCTTCTG CTACCCAATT GACCCACAGA GGTATCCATT TGGCCGGACT GTACAGATCT 
0061 TCTTGGTCTA AGCCCTTGTT CCGACATTTG GCAACAAAGC CTATACTGTA TTCCTATTGG 
0121 CCTAGTTCGT GTTCTTGGAG AGTTCGCGTT GCGCTGGCAA TAAAGAAGAT TGATTATGAC 
0181 ATTAAGCCGA CTTCTTTGCT AAAAACAGTT AGCGGACATG CCTATACGGA TGAATATAGG 
0241 GAAGTCAATC CGATGCAAAA GGTTCCCTCG TTGAAGATTG ATGGCCATAC CTTGTGCGAC 
0301 TCGGTGGCTA TTATCCACTA CCTGGAGGAA ACTCGACCTC AGCCAGCACT TCTGCCCCAA 
0361 GATCCGGTTA AAAGAGCAAA GATCCGTGAA ATTGTGGAGC TCATTTGCTC GGGCATCCAG 
0421 CCACTGCAAA ATGTATCTGT CCTAGATCAT ATAGGCAAGG ATCAGAGTCT GCAATGGGCA 
0481 CAACACTGGA TTTCTCGAGG  
 in silico PCR Fragment 
0001 ATGGCTTCTG CTACCCAATT GACCCACAGA GGTATCCATT TGGCCGGACT GTACAGATCT 
0061 TCTTGGTCTA AGCCCTTGTT CCGACATTTG GCAACAAAGC CTATACTGTA TTCCTATTGG 
0121 CCTAGTTCGT GTTCTTGGAG AGTTCGCGTT GCGCTGGCAA TAAAGAAGAT TGATTATGAC 
0181 ATTAAGCCGA CTTCTTTGCT AAAAACAGTT AGCGGACATG CCTATACGGA TGAATATAGG 
0241 GAAGTCAATC CGATGCAAAA GGTTCCCTCG TTGAAGATTG ATGGCCATAC CTTGTGCGAC 
0301 TCGGTGGCTA TTATCCACTA CCTGGAGGAA ACTCGACCTC AGCCAGCACT TCTGCCCCAA 
0361 GATCCGGTTA AAAGAGCAAA GATCCGTGAA ATTGTGGAGC TCATTTGCTC GGGCATCCAG 
0421 CCACTGCAAA ATGTATCTGT CCTAGATCAT ATAGGCAAGG ATCAGAGTCT GCAATGGGCA 
0481 CAACACTGGA TTTCTCGAGG  
 Assemble Data 
<PRE>

9362R-3.IR_full       1   ATGGCTTCTGCTACCCAATTGACCCACAGAGGTATCCATTTGGCCGGACTGTACAGATCT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9362R-3.in silico     1   ATGGCTTCTGCTACCCAATTGACCCACAGAGGTATCCATTTGGCCGGACTGTACAGATCT 60


9362R-3.IR_full       61  TCTTGGTCTAAGCCCTTGTTCCGACATTTGGCAACAAAGCCTATACTGTATTCCTATTGG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9362R-3.in silico     61  TCTTGGTCTAAGCCCTTGTTCCGACATTTGGCAACAAAGCCTATACTGTATTCCTATTGG 120


9362R-3.IR_full       121 CCTAGTTCGTGTTCTTGGAGAGTTCGCGTTGCGCTGGCAATAAAGAAGATTGATTATGAC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9362R-3.in silico     121 CCTAGTTCGTGTTCTTGGAGAGTTCGCGTTGCGCTGGCAATAAAGAAGATTGATTATGAC 180


9362R-3.IR_full       181 ATTAAGCCGACTTCTTTGCTAAAAACAGTTAGCGGACATGCCTATACGGATGAATATAGG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9362R-3.in silico     181 ATTAAGCCGACTTCTTTGCTAAAAACAGTTAGCGGACATGCCTATACGGATGAATATAGG 240


9362R-3.IR_full       241 GAAGTCAATCCGATGCAAAAGGTTCCCTCGTTGAAGATTGATGGCCATACCTTGTGCGAC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9362R-3.in silico     241 GAAGTCAATCCGATGCAAAAGGTTCCCTCGTTGAAGATTGATGGCCATACCTTGTGCGAC 300


9362R-3.IR_full       301 TCGGTGGCTATTATCCACTACCTGGAGGAAACTCGACCTCAGCCAGCACTTCTGCCCCAA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9362R-3.in silico     301 TCGGTGGCTATTATCCACTACCTGGAGGAAACTCGACCTCAGCCAGCACTTCTGCCCCAA 360


9362R-3.IR_full       361 GATCCGGTTAAAAGAGCAAAGATCCGTGAAATTGTGGAGCTCATTTGCTCGGGCATCCAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9362R-3.in silico     361 GATCCGGTTAAAAGAGCAAAGATCCGTGAAATTGTGGAGCTCATTTGCTCGGGCATCCAG 420


9362R-3.IR_full       421 CCACTGCAAAATGTATCTGTCCTAGATCATATAGGCAAGGATCAGAGTCTGCAATGGGCA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9362R-3.in silico     421 CCACTGCAAAATGTATCTGTCCTAGATCATATAGGCAAGGATCAGAGTCTGCAATGGGCA 480


9362R-3.IR_full       481 CAACACTGGATTTCTCGAGG 500
                          ||||||||||||||||||||
9362R-3.in silico     481 CAACACTGGATTTCTCGAGG 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_141637.2  CG9362-RA (CG9362), mRNA 
0   0  8  19  26  NM_169286.1  CG9363-RB, transcript variant B (CG9363), mRNA 
0   0  8  19  26  NM_206468.1  CG9363-RC, transcript variant C (CG9363), mRNA 
0   0  8  19  26  NM_141638.2  CG9363-RA, transcript variant A (CG9363), mRNA 
0   0  1  4  7  NM_132847.1  CG8959-RA (CG8959), mRNA 
0   0  1  3  4  NM_141204.3  CG1084-RA (Cont), mRNA 
0   0  1  3  4  NM_166794.1  CG2999-RB, transcript variant B (unc-13), mRNA 
0   0  1  3  2  NM_134290.1  CG3090-RB, transcript variant B (Sox14), mRNA 
0   0  1  3  2  NM_057546.2  CG3090-RA, transcript variant A (Sox14), mRNA 
0   0  1  2  5  NM_079899.3  CG11186-RA (toy), mRNA 
0   0  1  2  3  NM_139987.2  CG6372-RA (CG6372), mRNA 
0   0  1  2  2  NM_168895.1  CG12974-RB, transcript variant B (CG12974), mRNA 
0   0  1  2  2  NM_165715.1  CG30010-RA (CG30010), mRNA 
0   0  0  5  5  NM_136963.2  CG8646-RA (CG8646), mRNA 
0   0  0  4  6  NM_080139.3  CG8171-RA (dup), mRNA 
0   0  0  4  6  NM_080304.2  CG3466-RA (Cyp4d2), mRNA 
0   0  0  4  3  NM_142117.1  CG8066-RA (CG8066), mRNA 
0   0  0  4  3  NM_143609.2  CG31002-RA (CG31002), mRNA 
0   0  0  4  2  NM_001042905.1  CG15148-RC, transcript variant C (btv), mRNA 
0   0  0  4  2  NM_001042904.1  CG15148-RB, transcript variant B (btv), mRNA 
0   0  0  4  2  NM_136013.1  CG15148-RA, transcript variant A (btv), mRNA 
0   0  0  3  9  NM_168179.1  CG32394-RA (CG32394), mRNA 
0   0  0  3  5  NM_166322.1  CG16720-RB, transcript variant B (5-HT1A), mRNA 
0   0  0  3  5  NM_057454.3  CG16720-RA, transcript variant A (5-HT1A), mRNA 
0   0  0  3  4  NM_167848.1  CG18214-RD, transcript variant D (trio), mRNA 
0   0  0  3  4  NM_166093.1  CG8174-RA, transcript variant A (SRPK), mRNA 
0   0  0  3  4  NM_167520.2  CG32575-RB, transcript variant B (hang), mRNA 
0   0  0  3  4  NM_141964.2  CG6225-RA (CG6225), mRNA 
0   0  0  3  4  NM_167521.2  CG32575-RA, transcript variant A (hang), mRNA 
0   0  0  3  3  NM_139714.3  CG10624-RA (sinu), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway dme00350 : Tyrosine metabolism
dme01100 : Metabolic pathways

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