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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
9324R-1 |
| Symbol |
Pomp |
Full Name |
Pomp |
| CG No |
CG9324 |
Old CG No |
CG9324 |
| Synonyms |
POMP, 38E.20, CG9324, Pomp |
| Accession No (Link to NCBI) |
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| Inserted Chr. |
lll |
| Insertional Mutation |
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| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
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Yano H, Yamamoto-Hino M, Awano W, Aoki-Kinoshita KF, Tsuda-Sakurai K, Okano H, Goto S.
Identification of proteasome components required for apical localization of Chaoptin using functional genomics.
J Neurogenet (2012) 26(1) 53-63
[
PubMed ID = 22417167
]
[
RRC reference
]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAGCCATCACTGAAAGTCCAGC |
| Primer Seq. 3' |
aatctagaggtaccTCCCAGAGATTTCTCCACCAC |
| Predicted Fragment Size |
386 |
| IR fragment full Seq |
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| in silico PCR Fragment |
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| Assemble Data |
9324R-1.IR full 1 AGCCATCACTGAAAGTCCAGCCCGCCGAGGTGTCCGTGCTGAACGCCACCGGCCGTGTGG 60
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9324R-1.in silico 1 AGCCATCACTGAAAGTCCAGCCCGCCGAGGTGTCCGTGCTGAACGCCACCGGCCGTGTGG 60
9324R-1.IR full 61 GAATGCCCACCGAGGCCAACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACT 120
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9324R-1.in silico 61 GAATGCCCACCGAGGCCAACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACT 120
9324R-1.IR full 121 CGGAGCTGAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGNCTGCGCAACCAC 180
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9324R-1.in silico 121 CGGAGCTGAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGC-TGCGCAACCAC 180
9324R-1.IR full 181 GAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCACGTCAGGTGGGC 240
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9324R-1.in silico 181 GAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCACGTCAGGTGGGC 240
9324R-1.IR full 241 CGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGATGATGTCCTGACTGGCCGCTGTGAT 300
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9324R-1.in silico 241 CGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGACGATGTCCTGACTGGCCGCTGTGAT 300
9324R-1.IR full 301 TCCATTGGCTTCGAGGACTTCATGAACTTGCCCGAGAACAGCGAGCATATGCGTCAGCCC 360
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9324R-1.in silico 301 TCCATTGGCTTCGAGGACTTCATGAACTTGCCCGAGAACAGCGAGCATATGCGTCAGCCC 360
9324R-1.IR full 361 -ACGCTGTGGTGGAGAAATCTCTGGGA 387
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9324R-1.in silico 361 CACGCTGTGGTGGAGAAATCTCTGGGA 387
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
368 |
0 |
0 |
0 |
NM_136213.2 |
Pomp CG9324-RA (Pomp), mRNA |
| 0.27 |
1 |
2 |
4 |
3 |
NM_141876.1 |
CG12213-RB, transcript variant B (CG12213), mRNA |
| 0.27 |
1 |
2 |
4 |
3 |
NM_169442.1 |
CG12213-RA, transcript variant A (CG12213), mRNA |
| 0 |
0 |
3 |
4 |
4 |
NM_058133.3 |
ligatin CG31426-RA (ligatin), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_136748.2 |
CG17765-RA (CG17765), mRNA |
| 0 |
0 |
1 |
5 |
5 |
NM_167687.1 |
CG11943-RB, transcript variant B (CG11943), mRNA |
| 0 |
0 |
1 |
5 |
5 |
NM_134518.2 |
CG11943-RA, transcript variant A (CG11943), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_136869.2 |
CG13183-RA (CG13183), mRNA |
| 0 |
0 |
1 |
4 |
9 |
NM_135589.2 |
CG17104-RA (CG17104), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_176316.1 |
Mocs1 CG33048-RC, transcript variant C (Mocs1), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_176229.1 |
CG33147-RA (CG33147), mRNA |
| 0 |
0 |
1 |
3 |
10 |
NM_138033.1 |
CG13563-RA (CG13563), mRNA |
| 0 |
0 |
1 |
3 |
7 |
NM_078815.2 |
Leucine-rich repeat 47 CG6098-RA (Lrr47), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_057943.3 |
miranda CG12249-RA, transcript variant A (mira), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_057944.3 |
miranda CG12249-RB, transcript variant B (mira), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_133090.1 |
CG6696-RA (CG6696), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_079730.2 |
klingon CG6669-RA (klg), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_132294.2 |
Anaphase Promoting Complex 4 CG32707-RA (APC4), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_136455.1 |
CG2093-RA (CG2093), mRNA |
| 0 |
0 |
0 |
7 |
3 |
NM_137944.2 |
yellow-d2 CG9891-RA (yellow-d2), mRNA |
| 0 |
0 |
0 |
6 |
5 |
NM_057842.2 |
viking CG16858-RA (vkg), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_080166.2 |
scattered CG3766-RA (scat), mRNA |
| 0 |
0 |
0 |
5 |
4 |
NM_139425.1 |
CG5691-RA (CG5691), mRNA |
| 0 |
0 |
0 |
4 |
8 |
NM_001042796.1 |
rugose CG6775-RC, transcript variant C (rg), mRNA |
| 0 |
0 |
0 |
4 |
8 |
NM_080023.1 |
rugose CG6775-RA, transcript variant A (rg), mRNA |
| 0 |
0 |
0 |
4 |
8 |
NM_167028.1 |
rugose CG6775-RB, transcript variant B (rg), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_170524.1 |
warts CG12072-RA (wts), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_169228.1 |
CG31258-RA (CG31258), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_170415.2 |
CG31041-RA (CG31041), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_167371.1 |
CG32635-RA (CG32635), mRNA |
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