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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9311R-4 
 Symbol CG9311  Full Name CG9311 
 CG No CG9311  Old CG No CG9311 
 Synonyms CG9311 
 Accession No (Link to NCBI) NM_140465.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.<br> Zyxin links fat signaling to the hippo pathway.<br> PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment balanced with SM6a, Cy 
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGGTGCCCCGTTTGCATATGCT 
 Primer Seq. 3' 
aatctagaggtaccGGGTCATAAAATCCCCTCCGC 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 GGTGCCCCGT TTGCATATGC TNTGNTTCGC CCTAAAATCG AGTCCCGAGG GAACCTCCTT 
0061 TGCGGCTTTG AAAAAGTACA TCGCGGAATT TTATCATGAA GATCCAGAGG CTTACTCCAA 
0121 AGAGGTCCAT GCCCTGGAGA CTTTGCGCAA CCAGGCCATG CACACCACGA AAGATGGAGC 
0181 GCCGGTGATG AAACGCTACT ATTGCCAGCT ACACGCCCTT CAGAATCGAT TTCCACAGCT 
0241 GGCGGATCGC GGAATCTTCA CCTTTAAATG GAAGGATCTC TATCACAGTG CCGTTCACGA 
0301 GGTCACTGAT CTGCGATTCG AACGGGCTGC GGTGCTGTTC AACATTGCCG CATTGCACAC 
0361 ACAGTCTGGA GCGTCGGTGA CCCGTGGCGA TGTGGATGGA ATGAAGATGG CCTGCACTCA 
0421 CTTCCAGGCG GCTGCTTGGG CCTATGGAGA GCTGAGAGAA CGCTATGCCA ATGTCAATGG 
0481 CGGGAGGGGA TTTTATGACC C 
 in silico PCR Fragment 
0001 GGTGCCCCGT TTGCATATGC TCTGGTTCGC CCTAAAATCG AGTCCCGAGG GAACCTCCTT 
0061 TGCGGCTTTG AAAAAGTACA TCGCGGAATT TTATCATGAA GATCCAGAGG CTTACTCCAA 
0121 AGAGGTCCAT GCCCTGGAGA CTTTGCGCAA CCAGGCCATG CACACCACGA AAGATGGAGC 
0181 GCCGGTGATG AAACGCTACT ATTGCCAGCT ACACGCCCTT CAGAATCGAT TTCCACAGCT 
0241 GGCGGATCGC GGAATCTTCA CCTTTAAATG GAAGGATCTC TATCACAGTG CCGTTCACGA 
0301 GGTCACTGAT CTGCGATTCG AACGGGCTGC GGTGCTGTTC AACATTGCCG CATTGCACAC 
0361 TCAGTCCGGA GCGTCGGTGA CCCGTGGCGA TGTGGATGGA ATGAAGATGG CCTGCACTCA 
0421 CTTCCAGGCG GCTGCTTGGG CCTATGGAGA GCTGAGAGAA CGCTATGCCA ATGTCAATGG 
0481 C-GGAGGGGA TTTTATGACC C 
 Assemble Data 
<PRE>

9311R-4.IR_full       1   GGTGCCCCGTTTGCATATGCT<span class="snp"><tt>N</tt></span>TG<span class="snp"><tt>N</tt></span>TTCGCCCTAAAATCGAGTCCCGAGGGAACCTCCTT 60
                          |||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||
9311R-4.in silico     1   GGTGCCCCGTTTGCATATGCT<span class="snp"><tt>C</tt></span>TG<span class="snp"><tt>G</tt></span>TTCGCCCTAAAATCGAGTCCCGAGGGAACCTCCTT 60


9311R-4.IR_full       61  TGCGGCTTTGAAAAAGTACATCGCGGAATTTTATCATGAAGATCCAGAGGCTTACTCCAA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-4.in silico     61  TGCGGCTTTGAAAAAGTACATCGCGGAATTTTATCATGAAGATCCAGAGGCTTACTCCAA 120


9311R-4.IR_full       121 AGAGGTCCATGCCCTGGAGACTTTGCGCAACCAGGCCATGCACACCACGAAAGATGGAGC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-4.in silico     121 AGAGGTCCATGCCCTGGAGACTTTGCGCAACCAGGCCATGCACACCACGAAAGATGGAGC 180


9311R-4.IR_full       181 GCCGGTGATGAAACGCTACTATTGCCAGCTACACGCCCTTCAGAATCGATTTCCACAGCT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-4.in silico     181 GCCGGTGATGAAACGCTACTATTGCCAGCTACACGCCCTTCAGAATCGATTTCCACAGCT 240


9311R-4.IR_full       241 GGCGGATCGCGGAATCTTCACCTTTAAATGGAAGGATCTCTATCACAGTGCCGTTCACGA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-4.in silico     241 GGCGGATCGCGGAATCTTCACCTTTAAATGGAAGGATCTCTATCACAGTGCCGTTCACGA 300


9311R-4.IR_full       301 GGTCACTGATCTGCGATTCGAACGGGCTGCGGTGCTGTTCAACATTGCCGCATTGCACAC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-4.in silico     301 GGTCACTGATCTGCGATTCGAACGGGCTGCGGTGCTGTTCAACATTGCCGCATTGCACAC 360


9311R-4.IR_full       361 <span class="snp"><tt>A</tt></span>CAGTC<span class="snp"><tt>T</tt></span>GGAGCGTCGGTGACCCGTGGCGATGTGGATGGAATGAAGATGGCCTGCACTCA 420
                          <span class="snp"><tt>&nbsp;</tt></span>|||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-4.in silico     361 <span class="snp"><tt>T</tt></span>CAGTC<span class="snp"><tt>C</tt></span>GGAGCGTCGGTGACCCGTGGCGATGTGGATGGAATGAAGATGGCCTGCACTCA 420


9311R-4.IR_full       421 CTTCCAGGCGGCTGCTTGGGCCTATGGAGAGCTGAGAGAACGCTATGCCAATGTCAATGG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-4.in silico     421 CTTCCAGGCGGCTGCTTGGGCCTATGGAGAGCTGAGAGAACGCTATGCCAATGTCAATGG 480


9311R-4.IR_full       481 C<span class="snp"><tt>G</tt></span>GGAGGGGATTTTATGACCC 501
                          |<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||
9311R-4.in silico     481 C<span class="snp"><tt>-</tt></span>GGAGGGGATTTTATGACCC 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  2  NM_140465.2  CG9311-RA (CG9311), mRNA 
0   0  2  4  13  NM_143325.2  CG12876-RA (CG12876), mRNA 
0   0  1  2  5  NM_079953.3  CG10776-RA (wit), mRNA 
0   0  1  2  4  NM_057489.3  CG4722-RA (bib), mRNA 
0   0  1  2  4  NM_168882.2  CG32435-RB, transcript variant B (chb), mRNA 
0   0  1  2  4  NM_079912.3  CG32435-RA, transcript variant A (chb), mRNA 
0   0  1  2  4  NM_168883.1  CG32435-RC, transcript variant C (chb), mRNA 
0   0  0  5  5  NM_143496.3  CG15523-RA (CG15523), mRNA 
0   0  0  5  2  NM_142296.2  CG14899-RA (CG14899), mRNA 
0   0  0  4  5  NM_001014558.1  CG33514-RA (CG33514), mRNA 
0   0  0  4  4  NM_140091.2  CG6757-RA (SH3PX1), mRNA 
0   0  0  4  3  NM_057520.3  CG3497-RA (Su(H)), mRNA 
0   0  0  4  3  NM_141246.1  CG14659-RA (CG14659), mRNA 
0   0  0  4  2  NM_166870.1  CG32859-RA (eIF4E-7), mRNA 
0   0  0  4  2  NM_001014572.1  CG8624-RB, transcript variant B (melt), mRNA 
0   0  0  4  2  NM_079229.1  CG8624-RA, transcript variant A (melt), mRNA 
0   0  0  3  9  NM_166505.1  CG6562-RA, transcript variant A (synj), mRNA 
0   0  0  3  9  NM_130462.2  CG6562-RB, transcript variant B (synj), mRNA 
0   0  0  3  5  NM_206730.1  CG9038-RB, transcript variant B (UBL3), mRNA 
0   0  0  3  5  NM_078791.2  CG9494-RA (Tsp29Fa), mRNA 
0   0  0  3  5  NM_132855.2  CG9038-RA, transcript variant A (UBL3), mRNA 
0   0  0  3  4  NM_142681.1  CG7056-RA (CG7056), mRNA 
0   0  0  3  4  NM_137489.2  CG30118-RA (CG30118), mRNA 
0   0  0  3  4  NM_141027.2  CG10565-RA (CG10565), mRNA 
0   0  0  3  4  NM_078524.2  CG2262-RA (Smox), mRNA 
0   0  0  3  4  NM_143636.1  CG2135-RA (CG2135), mRNA 
0   0  0  3  4  NM_168544.1  CG32121-RA (CG32121), mRNA 
0   0  0  3  3  NM_132236.3  CG32717-RA, transcript variant A (sdt), mRNA 
0   0  0  3  3  NM_136775.2  CG12344-RA (CG12344), mRNA 
0   0  0  3  3  NM_132235.2  CG32717-RB, transcript variant B (sdt), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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