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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
9311R-3 |
| Symbol |
CG9311 |
Full Name |
CG9311 |
| CG No |
CG9311 |
Old CG No |
CG9311 |
| Synonyms |
CG9311 |
| Accession No (Link to NCBI) |
NM_140465.2 |
| Inserted Chr. |
lll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Swarup S, Pradhan-Sundd T, Verheyen EM.<br> Genome-wide identification of phospho-regulators of Wnt signaling in Drosophila.<br> Development (2015) 142(8) 1502-15
[
PubMed ID = 25852200
]
[
RRC reference
]
Umetsu D, Dunst S, Dahmann C.<br> An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.<br> PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.<br> Zyxin links fat signaling to the hippo pathway.<br> PLoS Biol (2011) 9(6) e1000624
[
PubMed ID = 21666802
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G.<br> A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network.<br> Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
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| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGGTGCCCCGTTTGCATATGCT |
| Primer Seq. 3' |
aatctagaggtaccGGGTCATAAAATCCCCTCCGC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 GGTGCCCCGT TTGCATATGC TNTGNTTCGC CCTAAAATCG AGTCCCGAGG GAACCTCCTT
0061 TGCGGCTTTG AAAAAGTACA TCGCGGAATT TTATCATGAA GATCCAGAGG CTTACTCCAA
0121 AGAGGTCCAT GCCCTGGAGA CTTTGCGCAA CCAGGCCATG CACACCACGA AAGATGGAGC
0181 GCCGGTGATG AAACGCTACT ATTGCCAGCT ACACGCCCTT CAGAATCGAT TTCCACAGCT
0241 GGCGGATCGC GGAATCTTCA CCTTTAAATG GAAGGATCTC TATCACAGTG CCGTTCACGA
0301 GGTCACTGAT CTGCGATTCG AACGGGCTGC GGTGCTGTTC AACATTGCCG CATTGCACAC
0361 ACAGTCTGGA GCGTCGGTGA CCCGTGGCGA TGTGGATGGA ATGAAGATGG CCTGCACTCA
0421 CTTCCAGGCG GCTGCTTGGG CCTATGGAGA GCTGAGAGAA CGCTATGCCA ATGTCAATGG
0481 CGGGAGGGGA TTTTATGACC C |
| in silico PCR Fragment |
0001 GGTGCCCCGT TTGCATATGC TCTGGTTCGC CCTAAAATCG AGTCCCGAGG GAACCTCCTT
0061 TGCGGCTTTG AAAAAGTACA TCGCGGAATT TTATCATGAA GATCCAGAGG CTTACTCCAA
0121 AGAGGTCCAT GCCCTGGAGA CTTTGCGCAA CCAGGCCATG CACACCACGA AAGATGGAGC
0181 GCCGGTGATG AAACGCTACT ATTGCCAGCT ACACGCCCTT CAGAATCGAT TTCCACAGCT
0241 GGCGGATCGC GGAATCTTCA CCTTTAAATG GAAGGATCTC TATCACAGTG CCGTTCACGA
0301 GGTCACTGAT CTGCGATTCG AACGGGCTGC GGTGCTGTTC AACATTGCCG CATTGCACAC
0361 TCAGTCCGGA GCGTCGGTGA CCCGTGGCGA TGTGGATGGA ATGAAGATGG CCTGCACTCA
0421 CTTCCAGGCG GCTGCTTGGG CCTATGGAGA GCTGAGAGAA CGCTATGCCA ATGTCAATGG
0481 C-GGAGGGGA TTTTATGACC C |
| Assemble Data |
<PRE>
9311R-3.IR_full 1 GGTGCCCCGTTTGCATATGCT<span class="snp"><tt>N</tt></span>TG<span class="snp"><tt>N</tt></span>TTCGCCCTAAAATCGAGTCCCGAGGGAACCTCCTT 60
|||||||||||||||||||||<span class="snp"><tt> </tt></span>||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||
9311R-3.in silico 1 GGTGCCCCGTTTGCATATGCT<span class="snp"><tt>C</tt></span>TG<span class="snp"><tt>G</tt></span>TTCGCCCTAAAATCGAGTCCCGAGGGAACCTCCTT 60
9311R-3.IR_full 61 TGCGGCTTTGAAAAAGTACATCGCGGAATTTTATCATGAAGATCCAGAGGCTTACTCCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-3.in silico 61 TGCGGCTTTGAAAAAGTACATCGCGGAATTTTATCATGAAGATCCAGAGGCTTACTCCAA 120
9311R-3.IR_full 121 AGAGGTCCATGCCCTGGAGACTTTGCGCAACCAGGCCATGCACACCACGAAAGATGGAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-3.in silico 121 AGAGGTCCATGCCCTGGAGACTTTGCGCAACCAGGCCATGCACACCACGAAAGATGGAGC 180
9311R-3.IR_full 181 GCCGGTGATGAAACGCTACTATTGCCAGCTACACGCCCTTCAGAATCGATTTCCACAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-3.in silico 181 GCCGGTGATGAAACGCTACTATTGCCAGCTACACGCCCTTCAGAATCGATTTCCACAGCT 240
9311R-3.IR_full 241 GGCGGATCGCGGAATCTTCACCTTTAAATGGAAGGATCTCTATCACAGTGCCGTTCACGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-3.in silico 241 GGCGGATCGCGGAATCTTCACCTTTAAATGGAAGGATCTCTATCACAGTGCCGTTCACGA 300
9311R-3.IR_full 301 GGTCACTGATCTGCGATTCGAACGGGCTGCGGTGCTGTTCAACATTGCCGCATTGCACAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-3.in silico 301 GGTCACTGATCTGCGATTCGAACGGGCTGCGGTGCTGTTCAACATTGCCGCATTGCACAC 360
9311R-3.IR_full 361 <span class="snp"><tt>A</tt></span>CAGTC<span class="snp"><tt>T</tt></span>GGAGCGTCGGTGACCCGTGGCGATGTGGATGGAATGAAGATGGCCTGCACTCA 420
<span class="snp"><tt> </tt></span>|||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-3.in silico 361 <span class="snp"><tt>T</tt></span>CAGTC<span class="snp"><tt>C</tt></span>GGAGCGTCGGTGACCCGTGGCGATGTGGATGGAATGAAGATGGCCTGCACTCA 420
9311R-3.IR_full 421 CTTCCAGGCGGCTGCTTGGGCCTATGGAGAGCTGAGAGAACGCTATGCCAATGTCAATGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9311R-3.in silico 421 CTTCCAGGCGGCTGCTTGGGCCTATGGAGAGCTGAGAGAACGCTATGCCAATGTCAATGG 480
9311R-3.IR_full 481 C<span class="snp"><tt>G</tt></span>GGAGGGGATTTTATGACCC 501
|<span class="snp"><tt> </tt></span>|||||||||||||||||||
9311R-3.in silico 481 C<span class="snp"><tt>-</tt></span>GGAGGGGATTTTATGACCC 501
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
2 |
NM_140465.2 |
CG9311-RA (CG9311), mRNA |
| 0 |
0 |
2 |
4 |
13 |
NM_143325.2 |
CG12876-RA (CG12876), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_079953.3 |
CG10776-RA (wit), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_057489.3 |
CG4722-RA (bib), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_168882.2 |
CG32435-RB, transcript variant B (chb), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_079912.3 |
CG32435-RA, transcript variant A (chb), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_168883.1 |
CG32435-RC, transcript variant C (chb), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_143496.3 |
CG15523-RA (CG15523), mRNA |
| 0 |
0 |
0 |
5 |
2 |
NM_142296.2 |
CG14899-RA (CG14899), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_001014558.1 |
CG33514-RA (CG33514), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_140091.2 |
CG6757-RA (SH3PX1), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_057520.3 |
CG3497-RA (Su(H)), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_141246.1 |
CG14659-RA (CG14659), mRNA |
| 0 |
0 |
0 |
4 |
2 |
NM_166870.1 |
CG32859-RA (eIF4E-7), mRNA |
| 0 |
0 |
0 |
4 |
2 |
NM_001014572.1 |
CG8624-RB, transcript variant B (melt), mRNA |
| 0 |
0 |
0 |
4 |
2 |
NM_079229.1 |
CG8624-RA, transcript variant A (melt), mRNA |
| 0 |
0 |
0 |
3 |
9 |
NM_166505.1 |
CG6562-RA, transcript variant A (synj), mRNA |
| 0 |
0 |
0 |
3 |
9 |
NM_130462.2 |
CG6562-RB, transcript variant B (synj), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_206730.1 |
CG9038-RB, transcript variant B (UBL3), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_078791.2 |
CG9494-RA (Tsp29Fa), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_132855.2 |
CG9038-RA, transcript variant A (UBL3), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_142681.1 |
CG7056-RA (CG7056), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_137489.2 |
CG30118-RA (CG30118), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_141027.2 |
CG10565-RA (CG10565), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_078524.2 |
CG2262-RA (Smox), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_143636.1 |
CG2135-RA (CG2135), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_168544.1 |
CG32121-RA (CG32121), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_132236.3 |
CG32717-RA, transcript variant A (sdt), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_136775.2 |
CG12344-RA (CG12344), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_132235.2 |
CG32717-RB, transcript variant B (sdt), mRNA |
|
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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