NIG-Fly - Fly Stocks of National Institute of Genetics -

Notice:
Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.

NIG-RNAi Strains Detail

Request : Click the "Order" button to request for this stock

Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

9133R-1

Symbol

CG9133

Full Name

CG9133

CG No

CG9133

Old CG No

CG9133

Synonyms

bs29f09.y1, CG32332, BEST:GH19464, BEST:GH19274, anon-WO0140519.53, anon-WO0140519.145, CG9133

Accession No (Link to NCBI)

NM_001031922.1

Inserted Chr.

lll

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees

viable

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgACCCGAACATCCCCAAGGTGC

Primer Seq. 3'

aatctagaggtaccGCCCTTCTTGCCCTTCTTCCC

Predicted Fragment Size

IR fragment full Seq

0001 ACCCGAACAT CCCCAAGGTG CGAGCCAATA TCAAGTACTC TGGGAACGAT GCCTGCGAGA 
0061 CCGACAACTA CTACGTGCCC TTCTCGAAGA TCAAGGAGGC CTGCGACTTC CAGGAGGCCA 
0121 AGGTCGACTG CTACCGCCAG CGACTCTGCG GCGGATCCGA TCCCATCGTG CCCGCGCACT 
0181 GTCCCGTCCA GAACCAGCGA TCATGTTGCA TGCAGGTCGA GCGGAAGGAC ATCATGGACA 
0241 CCATGAAGGG TGTCAATTTG GACACAAGGC GCAAGGGTAT CGAGGTTTGC TACAAGACCT 
0301 GCGAGGAGAC CGACAGCGAC GTGTTCCTAG TAAAACTGGG AAGTAAGGCC AAGTCGCAGC 
0361 ACAAGAAGAA TACCATCGAG ATCGAGCTGC GGACGCCCAA GCAGCCCGTA ACCCTTCCGA 
0421 TCAGCAAGGT GACCACGGAG ACCTATGTTT CCGAGGAGAT GCTAACCGGT GGCAAGAAGG 
0481 GGAAGAAGGG CAAGAANGGC

in silico PCR Fragment

0001 ACCCGAACAT CCCCAAGGTG CGAGCCAATA TCAAGTACTC TGGGAACGAT GCCTGCGAGA 
0061 CCGACAACTA CTACGTGCCC TTCTCGAAGA TCAAGGAGGC CTGCGACTTC CAGGAGGCCA 
0121 AGGTCGACTG CTACCGCCAG CGACTCTGCG GCGGATCCGA TCCCATCGTG CCCGCGCACT 
0181 GTCCCGTCCA GAACCAGCGA TCATGTTGCA TGCAGGTCGA GCGGAAGGAC ATCATGGACA 
0241 CCATGAAGGG TGTCAATTTG GACACAAGGC GCAAGGGTAT CGAGGTTTGC TACAAGACCT 
0301 GCGAGGAGAC CGACAGCGAC GTGTTCCTAG TAAAACTGGG AAGTAAGGCC AAGTCGCAGC 
0361 ACAAGAAGAA TACCATCGAG ATCGAGCTGC GGACGCCCAA GCAGCCCGTA ACCCTTCCGA 
0421 TCAGCAAGGT GACCACGGAG ACCTATGTTT CCGAGGAGAT GCTAACCGGT GGCAAGAAGG 
0481 GGAAGAAGGG CAAGAAGGGC

Assemble Data

<PRE>

9133R-1.IR_full       1   ACCCGAACATCCCCAAGGTGCGAGCCAATATCAAGTACTCTGGGAACGATGCCTGCGAGA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9133R-1.in silico     1   ACCCGAACATCCCCAAGGTGCGAGCCAATATCAAGTACTCTGGGAACGATGCCTGCGAGA 60


9133R-1.IR_full       61  CCGACAACTACTACGTGCCCTTCTCGAAGATCAAGGAGGCCTGCGACTTCCAGGAGGCCA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9133R-1.in silico     61  CCGACAACTACTACGTGCCCTTCTCGAAGATCAAGGAGGCCTGCGACTTCCAGGAGGCCA 120


9133R-1.IR_full       121 AGGTCGACTGCTACCGCCAGCGACTCTGCGGCGGATCCGATCCCATCGTGCCCGCGCACT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9133R-1.in silico     121 AGGTCGACTGCTACCGCCAGCGACTCTGCGGCGGATCCGATCCCATCGTGCCCGCGCACT 180


9133R-1.IR_full       181 GTCCCGTCCAGAACCAGCGATCATGTTGCATGCAGGTCGAGCGGAAGGACATCATGGACA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9133R-1.in silico     181 GTCCCGTCCAGAACCAGCGATCATGTTGCATGCAGGTCGAGCGGAAGGACATCATGGACA 240


9133R-1.IR_full       241 CCATGAAGGGTGTCAATTTGGACACAAGGCGCAAGGGTATCGAGGTTTGCTACAAGACCT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9133R-1.in silico     241 CCATGAAGGGTGTCAATTTGGACACAAGGCGCAAGGGTATCGAGGTTTGCTACAAGACCT 300


9133R-1.IR_full       301 GCGAGGAGACCGACAGCGACGTGTTCCTAGTAAAACTGGGAAGTAAGGCCAAGTCGCAGC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9133R-1.in silico     301 GCGAGGAGACCGACAGCGACGTGTTCCTAGTAAAACTGGGAAGTAAGGCCAAGTCGCAGC 360


9133R-1.IR_full       361 ACAAGAAGAATACCATCGAGATCGAGCTGCGGACGCCCAAGCAGCCCGTAACCCTTCCGA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9133R-1.in silico     361 ACAAGAAGAATACCATCGAGATCGAGCTGCGGACGCCCAAGCAGCCCGTAACCCTTCCGA 420


9133R-1.IR_full       421 TCAGCAAGGTGACCACGGAGACCTATGTTTCCGAGGAGATGCTAACCGGTGGCAAGAAGG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9133R-1.in silico     421 TCAGCAAGGTGACCACGGAGACCTATGTTTCCGAGGAGATGCTAACCGGTGGCAAGAAGG 480


9133R-1.IR_full       481 GGAAGAAGGGCAAGAA<span class="snp"><tt>N</tt></span>GGC 500
                          ||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||
9133R-1.in silico     481 GGAAGAAGGGCAAGAA<span class="snp"><tt>G</tt></span>GGC 500

</PRE>

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	6	13	18	NM_001031924.1	CG9130-RB, transcript variant B (CG9130), mRNA
100	482	6	13	18	NM_001031925.1	CG9130-RA, transcript variant A (CG9130), mRNA
100	482	6	13	18	NM_001031921.1	CG9133-RD, transcript variant D (CG9133), mRNA
100	482	6	13	18	NM_001031923.1	CG9133-RC, transcript variant C (CG9133), mRNA
100	482	6	13	18	NM_001031922.1	CG9133-RB, transcript variant B (CG9133), mRNA
0.2	1	4	6	4	NM_138086.2	CG11413-RA (CG11413), mRNA
0.2	1	4	6	4	NM_001038882.1	CG4622-RB, transcript variant B (CG4622), mRNA
0	0	6	2	3	NM_130597.2	CG14817-RA (CG14817), mRNA
0	0	5	3	5	NM_058025.3	CG4008-RA (und), mRNA
0	0	3	5	4	NM_169871.1	CG6184-RC, transcript variant C (CG6184), mRNA
0	0	3	5	4	NM_142567.1	CG6184-RA, transcript variant A (CG6184), mRNA
0	0	3	5	4	NM_169870.1	CG6184-RB, transcript variant B (CG6184), mRNA
0	0	3	3	2	NM_130660.1	CG2650-RA (CG2650), mRNA
0	0	2	7	4	NM_079511.3	CG10609-RA (Or83b), mRNA
0	0	2	2	4	NM_078673.2	CG7128-RA (Taf8), mRNA
0	0	1	8	3	NM_140252.1	CG10361-RA (CG10361), mRNA
0	0	1	6	14	NM_001014591.1	CG8103-RB, transcript variant B (Mi-2), mRNA
0	0	1	6	14	NM_140897.2	CG8103-RA, transcript variant A (Mi-2), mRNA
0	0	1	3	16	NM_166126.1	CG18255-RC, transcript variant C (Strn-Mlck), mRNA
0	0	1	3	13	NM_166130.1	CG18255-RE, transcript variant E (Strn-Mlck), mRNA
0	0	1	3	11	NM_141811.2	CG5252-RA (Ranbp9), mRNA
0	0	1	3	3	NM_140712.1	CG13727-RA (CG13727), mRNA
0	0	1	3	3	NM_079336.2	CG7002-RA (Hml), mRNA
0	0	1	3	3	NM_168325.2	CG4347-RC, transcript variant C (UGP), mRNA
0	0	1	3	3	NM_140043.3	CG4347-RA, transcript variant A (UGP), mRNA
0	0	1	2	12	NM_166688.1	CG30426-RA (CG30426), mRNA
0	0	1	2	7	NM_137540.1	CG18190-RA (CG18190), mRNA
0	0	1	2	6	NM_137251.2	CG8443-RA (CG8443), mRNA
0	0	1	2	5	NM_132074.1	CG3585-RA (CG3585), mRNA
0	0	1	2	5	NM_134850.2	CG3210-RA (Drp1), mRNA

Pathways (updated: 2024/04/26)

KEGG Pathway

Back