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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 8072R-1 
 Symbol CG8072  Full Name CG8072 
 CG No CG8072  Old CG No CG8072 
 Synonyms CG8072 
 Accession No (Link to NCBI) NM_140127.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTTCATGGCCTGGTGAACATGG 
 Primer Seq. 3' 
aatctagaggtaccTAGGTTTCCCTCGACAGGTGG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 TTCATGGCCT GGTGAACATG GCCTATTTCC GTGAGTATTT GCTGGGTCTC CACAACGGAT 
0061 ATCGCCAAGA GGTGGCCAGC AACTTGTTTG TCGACTTGCC ACCTGCGCAG AAAATGCCCG 
0121 AATTGGTGTG GGACAATTAC CTGTCGGTGG TTGCCGAATA TCACCTGAAA CGCTGCCAAA 
0181 TGGATCTGCA CCGATGACTC CTGCGTGGCC ACCGATGATT TCTCAGAACC GCATTTCAAC 
0241 TACGCCGAGG ATTTCTATCC AAGACCAGTG ATTCGACAAT CGAATGTTCG GGAAATGACC 
0301 ATCTTGGCTG AACAATGGCT GGACGAGCTC TACGATCTGG ATGATATAGC CACATATAGT 
0361 GCGGAAGGTG AAATCAGGAA TATCATCAAC GATCGCAGTT CCTATATGGG CTGTGCTGCT 
0421 GGCCAGGATT ACGATCTGTG GAATATACAC TTTGTGCTCG TTTGCTATTA TAGCTCAGGA 
0481 CCACCTGTCG AGGGAAACCT A 
 in silico PCR Fragment 
0001 TTCATGGCCT GGTGAACATG GCCTATTTCC GTGAGTATTT GCTGGGTCTC CACAACGGAT 
0061 ATCGCCAAGA GGTGGCCAGC AACTTGTTTG TCGACTTGCC ACCTGCGCAG AAAATGCCCG 
0121 AATTGGTGTG GGACAATTAC CTGTCGGTGG TTGCCGAATA TCACCTGAAA CGCTGCCAAA 
0181 TGGATCTGC- CCGATGACTC CTGCGTGGCC ACCGATGATT TCTCAGAACC GCATTTCAAC 
0241 TACGCCGAGG ATTTCTATCC AAGACCAGTG ATTCGACAAT CGAATGTTCG GGAAATGACC 
0301 ATCTTGGCTG AACAATGGCT GGACGAGCTC TACGATCTGG ATGATATAGC CACATATAGT 
0361 GCGGAAGGTG AAATCAGGAA TATCATCAAC GATCGCAGTT CCTATATGGG CTGTGCTGCT 
0421 GGCCAGGATT ACGATCTGTG GAATATACAC TTTGTGCTCG TTTGCTATTA TAGCTCAGGA 
0481 CCACCTGTCG AGGGAAACCT A 
 Assemble Data 
<PRE>

8072R-1.IR_full       1   TTCATGGCCTGGTGAACATGGCCTATTTCCGTGAGTATTTGCTGGGTCTCCACAACGGAT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8072R-1.in silico     1   TTCATGGCCTGGTGAACATGGCCTATTTCCGTGAGTATTTGCTGGGTCTCCACAACGGAT 60


8072R-1.IR_full       61  ATCGCCAAGAGGTGGCCAGCAACTTGTTTGTCGACTTGCCACCTGCGCAGAAAATGCCCG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8072R-1.in silico     61  ATCGCCAAGAGGTGGCCAGCAACTTGTTTGTCGACTTGCCACCTGCGCAGAAAATGCCCG 120


8072R-1.IR_full       121 AATTGGTGTGGGACAATTACCTGTCGGTGGTTGCCGAATATCACCTGAAACGCTGCCAAA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8072R-1.in silico     121 AATTGGTGTGGGACAATTACCTGTCGGTGGTTGCCGAATATCACCTGAAACGCTGCCAAA 180


8072R-1.IR_full       181 TGGATCTGC<span class="snp"><tt>A</tt></span>CCGATGACTCCTGCGTGGCCACCGATGATTTCTCAGAACCGCATTTCAAC 240
                          |||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||
8072R-1.in silico     181 TGGATCTGC<span class="snp"><tt>-</tt></span>CCGATGACTCCTGCGTGGCCACCGATGATTTCTCAGAACCGCATTTCAAC 240


8072R-1.IR_full       241 TACGCCGAGGATTTCTATCCAAGACCAGTGATTCGACAATCGAATGTTCGGGAAATGACC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8072R-1.in silico     241 TACGCCGAGGATTTCTATCCAAGACCAGTGATTCGACAATCGAATGTTCGGGAAATGACC 300


8072R-1.IR_full       301 ATCTTGGCTGAACAATGGCTGGACGAGCTCTACGATCTGGATGATATAGCCACATATAGT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8072R-1.in silico     301 ATCTTGGCTGAACAATGGCTGGACGAGCTCTACGATCTGGATGATATAGCCACATATAGT 360


8072R-1.IR_full       361 GCGGAAGGTGAAATCAGGAATATCATCAACGATCGCAGTTCCTATATGGGCTGTGCTGCT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8072R-1.in silico     361 GCGGAAGGTGAAATCAGGAATATCATCAACGATCGCAGTTCCTATATGGGCTGTGCTGCT 420


8072R-1.IR_full       421 GGCCAGGATTACGATCTGTGGAATATACACTTTGTGCTCGTTTGCTATTATAGCTCAGGA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8072R-1.in silico     421 GGCCAGGATTACGATCTGTGGAATATACACTTTGTGCTCGTTTGCTATTATAGCTCAGGA 480


8072R-1.IR_full       481 CCACCTGTCGAGGGAAACCTA 501
                          |||||||||||||||||||||
8072R-1.in silico     481 CCACCTGTCGAGGGAAACCTA 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_140127.1  CG8072-RA (CG8072), mRNA 
0   0  2  6  2  NM_001043039.1  CG17800-PAV (Dscam), mRNA 
0   0  2  6  2  NM_001043036.1  CG17800-PAA (Dscam), mRNA 
0   0  2  3  2  NM_139399.1  CG13921-RA, transcript variant A (CG13921), mRNA 
0   0  2  3  2  NM_206235.1  CG13921-RB, transcript variant B (CG13921), mRNA 
0   0  2  2  3  NM_143493.2  CG31040-RA (Cog7), mRNA 
0   0  2  2  2  NM_169386.1  CG17228-RA, transcript variant A (pros), mRNA 
0   0  2  2  2  NM_176459.1  CG17228-RD, transcript variant D (pros), mRNA 
0   0  2  2  2  NM_079593.3  CG17228-RC, transcript variant C (pros), mRNA 
0   0  1  6  3  NM_141037.3  CG9391-RA, transcript variant A (CG9391), mRNA 
0   0  1  6  3  NM_168893.2  CG9391-RB, transcript variant B (CG9391), mRNA 
0   0  1  3  4  NM_137367.2  CG18467-RA (CG18467), mRNA 
0   0  1  3  3  NM_132519.1  CG9369-RA (m), mRNA 
0   0  1  2  4  NM_132068.1  CG15899-RB (Ca-alpha1T), mRNA 
0   0  1  2  2  NM_167615.1  CG32549-RC, transcript variant C (CG32549), mRNA 
0   0  1  2  2  NM_167614.1  CG32549-RE, transcript variant E (CG32549), mRNA 
0   0  1  2  2  NM_133061.2  CG32549-RD, transcript variant D (CG32549), mRNA 
0   0  1  2  2  NM_206785.1  CG32549-RF, transcript variant F (CG32549), mRNA 
0   0  1  2  2  NM_206786.1  CG32549-RB, transcript variant B (CG32549), mRNA 
0   0  1  2  2  NM_206787.1  CG32549-RA, transcript variant A (CG32549), mRNA 
0   0  0  7  2  NM_001032019.1  CG3992-RD, transcript variant D (srp), mRNA 
0   0  0  7  2  NM_169694.1  CG3992-RB, transcript variant B (srp), mRNA 
0   0  0  7  2  NM_169696.1  CG3992-RA, transcript variant A (srp), mRNA 
0   0  0  6  4  NM_170192.1  CG11790-RB, transcript variant B (CG11790), mRNA 
0   0  0  6  4  NM_143069.1  CG11790-RA, transcript variant A (CG11790), mRNA 
0   0  0  5  5  NM_167275.1  CG32668-RA (CG32668), mRNA 
0   0  0  5  2  NM_135042.2  CG14043-RA (CG14043), mRNA 
0   0  0  4  5  NM_166851.1  CG17829-RB, transcript variant B (CG17829), mRNA 
0   0  0  4  5  NM_166852.1  CG17829-RC, transcript variant C (CG17829), mRNA 
0   0  0  4  5  NM_143797.1  CG17829-RA, transcript variant A (CG17829), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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