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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
8037R-3 |
| Symbol |
Su(Tpl) |
Full Name |
Su(Tpl) |
| CG No |
CG32217 |
Old CG No |
CG8037 |
| Synonyms |
l(3)76BDs, dELL, ELL, SR3-4A, SY3-1, SS3-4, Ell, l(3)S085401, 0854/01, l(3)S000606, CR32216, CG8037, CG32217, Su(Tpl) |
| Accession No (Link to NCBI) |
NM_140898.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
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| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTGCACTATCGACCGGCAATTA |
| Primer Seq. 3' |
aatctagaggtaccCGATATCCGACTGATTCGGCT |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TGCACTATCG ACCGGCAATT ATGGAATGTC CCAGAGCCAC CGTTACACCG ATGATAGCAA
0061 GGAGTACATC ATCGTCAAGC TTACCGATTC TGCCTTCCGT GCGATCGAGG AATATCAGCG
0121 CGATGACAAC GCTAAACGCC TGCAACCAGG CCAAAGGGCC AAAATCCAAT TTGTTGGCAA
0181 CACGGGTGTC ATACAGTTCC CGCGACCAGC GACGGATGCT AATGGCATCC CTAATGCTAA
0241 TGGCAATGGC AGCGACGCGA NCTGGAGCAG GAGGAGGAGG TGGTAGAAAA TTTGGCTTCA
0301 CTATCAACAA TATGGAGGGA ACGCTTGAAT GCGTTCAGCA GCAGCAACGG AGCCTCGGAG
0361 TCCTCGGAGC GGTCACCCTG CGAATGCGGA TTCATGCCAA TGAAGATGTC TACGATTCGA
0421 CACGCACAAA AATGGCCATT GCCGAGGAGA CGGAGAAGAG CAAGTGCATC AGGGAAATCA
0481 AGCCGAATCA GTCGGATATC G |
| in silico PCR Fragment |
0001 TGCACTATCG ACCGGCAATT ATGGAATGTC CCAGAGCCAC CGTTACACCG ATGATAGCAA
0061 GGAGTACATC ATCGTCAAGC TTACCGATTC TGCCTTCCGT GCGATCGAGG AATATCAGCG
0121 CGATGACAAC GCTAAACGCC TGCAACCAGG CCAAAGGGCC AAAATCCAAT TTGTGGGCAA
0181 CACGGGTGTC ATACAGTTCC CGCGACCAGC GACGGATGCT AATGGCATCC CTAATGCTAA
0241 TGGCAATGGC AGCGACGCGA -CTGGAGCAG GAGGAGGAGG TGGTAGAAAA TTTGGCTTCA
0301 CTATCAACAA TATGGAGGGA ACGCTTGAAT GCGTTCAGCA GCAGCAACGG AGCCTCGGAG
0361 TCCTCGGAGC GGTCACCCTG CGAATGCGGA TTCATGCCAA TGAAGATGTC TACGATTCGA
0421 CACGCACAAA AATGGCCATT GCCGAGGAGA CGGAGAAGAG CAAGTGCATC AGGGAAATCA
0481 AGCCGAATCA GTCGGATATC G |
| Assemble Data |
<PRE>
8037R-3.IR_full 1 TGCACTATCGACCGGCAATTATGGAATGTCCCAGAGCCACCGTTACACCGATGATAGCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8037R-3.in silico 1 TGCACTATCGACCGGCAATTATGGAATGTCCCAGAGCCACCGTTACACCGATGATAGCAA 60
8037R-3.IR_full 61 GGAGTACATCATCGTCAAGCTTACCGATTCTGCCTTCCGTGCGATCGAGGAATATCAGCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8037R-3.in silico 61 GGAGTACATCATCGTCAAGCTTACCGATTCTGCCTTCCGTGCGATCGAGGAATATCAGCG 120
8037R-3.IR_full 121 CGATGACAACGCTAAACGCCTGCAACCAGGCCAAAGGGCCAAAATCCAATTTGT<span class="snp"><tt>T</tt></span>GGCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||
8037R-3.in silico 121 CGATGACAACGCTAAACGCCTGCAACCAGGCCAAAGGGCCAAAATCCAATTTGT<span class="snp"><tt>G</tt></span>GGCAA 180
8037R-3.IR_full 181 CACGGGTGTCATACAGTTCCCGCGACCAGCGACGGATGCTAATGGCATCCCTAATGCTAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8037R-3.in silico 181 CACGGGTGTCATACAGTTCCCGCGACCAGCGACGGATGCTAATGGCATCCCTAATGCTAA 240
8037R-3.IR_full 241 TGGCAATGGCAGCGACGCGA<span class="snp"><tt>N</tt></span>CTGGAGCAGGAGGAGGAGGTGGTAGAAAATTTGGCTTCA 300
||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||
8037R-3.in silico 241 TGGCAATGGCAGCGACGCGA<span class="snp"><tt>-</tt></span>CTGGAGCAGGAGGAGGAGGTGGTAGAAAATTTGGCTTCA 300
8037R-3.IR_full 301 CTATCAACAATATGGAGGGAACGCTTGAATGCGTTCAGCAGCAGCAACGGAGCCTCGGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8037R-3.in silico 301 CTATCAACAATATGGAGGGAACGCTTGAATGCGTTCAGCAGCAGCAACGGAGCCTCGGAG 360
8037R-3.IR_full 361 TCCTCGGAGCGGTCACCCTGCGAATGCGGATTCATGCCAATGAAGATGTCTACGATTCGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8037R-3.in silico 361 TCCTCGGAGCGGTCACCCTGCGAATGCGGATTCATGCCAATGAAGATGTCTACGATTCGA 420
8037R-3.IR_full 421 CACGCACAAAAATGGCCATTGCCGAGGAGACGGAGAAGAGCAAGTGCATCAGGGAAATCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8037R-3.in silico 421 CACGCACAAAAATGGCCATTGCCGAGGAGACGGAGAAGAGCAAGTGCATCAGGGAAATCA 480
8037R-3.IR_full 481 AGCCGAATCAGTCGGATATCG 501
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8037R-3.in silico 481 AGCCGAATCAGTCGGATATCG 501
</PRE>
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_140898.3 |
CG32217-RA (Su(Tpl)), mRNA |
| 0.41 |
2 |
2 |
5 |
7 |
NM_169202.1 |
CG11094-RA, transcript variant A (dsx), mRNA |
| 0.41 |
2 |
2 |
3 |
9 |
NM_138073.1 |
CG13579-RA (CG13579), mRNA |
| 0 |
0 |
6 |
5 |
12 |
NM_167198.1 |
CG32697-RB, transcript variant B (l(1)G0232), mRNA |
| 0 |
0 |
6 |
5 |
12 |
NM_132348.2 |
CG32697-RA, transcript variant A (l(1)G0232), mRNA |
| 0 |
0 |
6 |
5 |
12 |
NM_001014728.1 |
CG32697-RF, transcript variant F (l(1)G0232), mRNA |
| 0 |
0 |
6 |
5 |
12 |
NM_167197.1 |
CG32697-RC, transcript variant C (l(1)G0232), mRNA |
| 0 |
0 |
5 |
7 |
12 |
NM_143089.2 |
CG11849-RA (dan), mRNA |
| 0 |
0 |
4 |
14 |
35 |
NM_134512.4 |
CG12701-RA, transcript variant A (CG12701), mRNA |
| 0 |
0 |
4 |
14 |
35 |
NM_167685.1 |
CG12701-RB, transcript variant B (CG12701), mRNA |
| 0 |
0 |
4 |
8 |
15 |
NM_139420.1 |
CG12361-RA (CG12361), mRNA |
| 0 |
0 |
4 |
5 |
17 |
NM_132525.1 |
CG15740-RA (CG15740), mRNA |
| 0 |
0 |
4 |
3 |
10 |
NM_079172.2 |
CG11494-RB, transcript variant B (BtbVII), mRNA |
| 0 |
0 |
4 |
3 |
10 |
NM_167990.1 |
CG11494-RA, transcript variant A (BtbVII), mRNA |
| 0 |
0 |
3 |
14 |
25 |
NM_135939.2 |
CG4132-RA (pkaap), mRNA |
| 0 |
0 |
3 |
10 |
12 |
NM_144026.1 |
CG11458-RA (CG11458), mRNA |
| 0 |
0 |
2 |
14 |
32 |
NM_167620.2 |
CG32547-RA (CG32547), mRNA |
| 0 |
0 |
2 |
9 |
12 |
NM_079903.2 |
CG15319-RB (nej), mRNA |
| 0 |
0 |
2 |
6 |
6 |
NM_142122.2 |
CG7832-RA (CG7832), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_078523.2 |
CG2252-RB, transcript variant B (fs(1)h), mRNA |
| 0 |
0 |
2 |
3 |
7 |
NM_206645.1 |
CG2252-RE, transcript variant E (fs(1)h), mRNA |
| 0 |
0 |
2 |
3 |
7 |
NM_167144.2 |
CG2252-RA, transcript variant A (fs(1)h), mRNA |
| 0 |
0 |
2 |
3 |
7 |
NM_206647.1 |
CG2252-RC, transcript variant C (fs(1)h), mRNA |
| 0 |
0 |
2 |
3 |
7 |
NM_206646.1 |
CG2252-RD, transcript variant D (fs(1)h), mRNA |
| 0 |
0 |
2 |
3 |
6 |
NM_205937.1 |
CG13394-RB, transcript variant B (CG13394), mRNA |
| 0 |
0 |
2 |
3 |
6 |
NM_135380.3 |
CG13394-RA, transcript variant A (CG13394), mRNA |
| 0 |
0 |
2 |
3 |
5 |
NM_142201.1 |
CG14868-RA (CG14868), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_135265.1 |
CG4971-RA (Wnt10), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_136633.2 |
CG2072-RA (TXBP181-like), mRNA |
| 0 |
0 |
2 |
2 |
11 |
NM_079317.2 |
CG10704-RA (toe), mRNA |
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
dme03250
:
Viral life cycle - HIV-1
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