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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

7611R-1

Symbol

CG7611

Full Name

CG7611

CG No

CG7611

Old CG No

CG7611

Synonyms

CG7611

Accession No (Link to NCBI)

NM_141069.2

Inserted Chr.

lll

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees

lethal

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgCGATGGAGGCAGTGGCGATGA

Primer Seq. 3'

aatctagaggtaccGCTCGCTGCGAAGGACGTGAA

Predicted Fragment Size

IR fragment full Seq

0001 CGATGGAGGC AgtGGNGATG ACAGCGTCGG CATCGGTGAT GAGAATCCAT CGGGCAGCAG 
0061 CgNCGCCACG AACGGACACG ACTCCAAACA CAACGGCTTC ATTGTCAACA ATAACGGCAG 
0121 CAGCAGTCGC NATCGTCGAC GGCGANGAAC AATCGGGAAA ACACCAGCTG CAGCGGTGTG 
0181 CAGCTGGACA AGTCCAACCA AGAGATCATC CGGCTGATCG GACAGTATCT GCATGACGTC 
0241 GGTCTCGATA AGTCAGTCCA AACGCTCATG TTGGAATCCG GATGCTACTT GGAACACCCC 
0301 TCTGCAACCA AGTTTAGGGA GCACGTCCTA ATGGGTGACT GGTCAAAGGC AGATTCAGAC 
0361 CTTAAGGACC TAGAGCCACT AATCGACAAT GGGAAATTGG CAACGATCNC CGAAATGAAG 
0421 TTCATATTGC TGGAGCAAAA GTATTTAGAG CATTTGGATG ATGGCAATCC CTTGGACGCC 
0481 CTTCACGTCC TTCGCAGCGA GC

in silico PCR Fragment

0001 CGATGGAGGC AGTGGCGATG ACAGCGTCGG CATCGGTGAT GAGAATCCAT CGGGCAGCAG 
0061 CGCCGCCACG AACGGACACG ACTCCAAACA CAACGGCTTC ATTGTCAACA ATAACGGCAG 
0121 CAGCAGTCGC -ATCGTCGAC GGCGA-GAAC AATCGGGAAA ACACCAGCTG CAGCGGTGTG 
0181 CAGCTGGACA AGTCCAACCA AGAGATCATC CGGCTGATCG GACAGTATCT GCATGACGTC 
0241 GGTCTCGATA AGTCAGTCCA AACGCTCATG TTGGAATCCG GATGCTACTT GGAACACCCC 
0301 TCTGCAACCA AGTTTAGGGA GCACGTCCTA ATGGGTGACT GGTCAAAGGC AGATTCAGAC 
0361 CTTAAGGACC TAGAGCCACT AATCGACAAT GGGAAATTGG CAACGATCAC CGAAATGAAG 
0421 TTCATATTGC TGGAGCAAAA GTATTTAGAG CATTTGGATG ATGGCAATCC CTTGGACGCC 
0481 CTTCACGTCC TTCGCAGCGA GC

Assemble Data

<PRE>

7611R-1.IR_full       1   CGATGGAGGCAGTGG<span class="snp"><tt>N</tt></span>GATGACAGCGTCGGCATCGGTGATGAGAATCCATCGGGCAGCAG 60
                          |||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     1   CGATGGAGGCAGTGG<span class="snp"><tt>C</tt></span>GATGACAGCGTCGGCATCGGTGATGAGAATCCATCGGGCAGCAG 60


7611R-1.IR_full       61  CG<span class="snp"><tt>N</tt></span>CGCCACGAACGGACACGACTCCAAACACAACGGCTTCATTGTCAACAATAACGGCAG 120
                          ||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     61  CG<span class="snp"><tt>C</tt></span>CGCCACGAACGGACACGACTCCAAACACAACGGCTTCATTGTCAACAATAACGGCAG 120


7611R-1.IR_full       121 CAGCAGTCGC<span class="snp"><tt>N</tt></span>ATCGTCGACGGCGA<span class="snp"><tt>N</tt></span>GAACAATCGGGAAAACACCAGCTGCAGCGGTGTG 180
                          ||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||
7611R-1.in silico     121 CAGCAGTCGC<span class="snp"><tt>-</tt></span>ATCGTCGACGGCGA<span class="snp"><tt>-</tt></span>GAACAATCGGGAAAACACCAGCTGCAGCGGTGTG 180


7611R-1.IR_full       181 CAGCTGGACAAGTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     181 CAGCTGGACAAGTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTC 240


7611R-1.IR_full       241 GGTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTGGAACACCCC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     241 GGTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTGGAACACCCC 300


7611R-1.IR_full       301 TCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTGGTCAAAGGCAGATTCAGAC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     301 TCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTGGTCAAAGGCAGATTCAGAC 360


7611R-1.IR_full       361 CTTAAGGACCTAGAGCCACTAATCGACAATGGGAAATTGGCAACGATC<span class="snp"><tt>N</tt></span>CCGAAATGAAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||
7611R-1.in silico     361 CTTAAGGACCTAGAGCCACTAATCGACAATGGGAAATTGGCAACGATC<span class="snp"><tt>A</tt></span>CCGAAATGAAG 420


7611R-1.IR_full       421 TTCATATTGCTGGAGCAAAAGTATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     421 TTCATATTGCTGGAGCAAAAGTATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCC 480


7611R-1.IR_full       481 CTTCACGTCCTTCGCAGCGAGC 502
                          ||||||||||||||||||||||
7611R-1.in silico     481 CTTCACGTCCTTCGCAGCGAGC 502

</PRE>

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	0	0	0	NM_168916.1	CG7611-RE, transcript variant E (CG7611), mRNA
100	482	0	0	0	NM_168917.1	CG7611-RF, transcript variant F (CG7611), mRNA
100	482	0	0	0	NM_168918.1	CG7611-RG, transcript variant G (CG7611), mRNA
100	482	0	0	0	NM_168913.1	CG7611-RB, transcript variant B (CG7611), mRNA
100	482	0	0	0	NM_168919.1	CG7611-RH, transcript variant H (CG7611), mRNA
100	482	0	0	0	NM_168914.1	CG7611-RC, transcript variant C (CG7611), mRNA
100	482	0	0	0	NM_168915.1	CG7611-RD, transcript variant D (CG7611), mRNA
100	482	0	0	0	NM_141069.2	CG7611-RA, transcript variant A (CG7611), mRNA
0	0	4	3	5	NM_079306.2	CG5940-RA, transcript variant A (CycA), mRNA
0	0	3	3	11	NM_001014727.1	CG12154-RB, transcript variant B (oc), mRNA
0	0	3	3	11	NM_078536.3	CG12154-RA, transcript variant A (oc), mRNA
0	0	3	3	4	NM_165693.2	CG30004-RA (CG30004), mRNA
0	0	3	2	3	NM_079694.2	CG5460-RC, transcript variant C (H), mRNA
0	0	3	2	3	NM_169907.1	CG5460-RA, transcript variant A (H), mRNA
0	0	3	2	3	NM_169908.1	CG5460-RD, transcript variant D (H), mRNA
0	0	3	2	3	NM_169909.1	CG5460-RB, transcript variant B (H), mRNA
0	0	3	2	3	NM_136859.2	CG8991-RA (Sobp), mRNA
0	0	2	6	10	NM_141636.1	CG16777-RA (CG16777), mRNA
0	0	2	4	4	NM_206363.2	CG17839-RB, transcript variant B (CG17839), mRNA
0	0	2	2	7	NM_142444.1	CG18599-RA (CG18599), mRNA
0	0	2	2	3	NM_079229.1	CG8624-RA, transcript variant A (melt), mRNA
0	0	2	2	3	NM_001014572.1	CG8624-RB, transcript variant B (melt), mRNA
0	0	1	10	12	NM_164696.1	CG31635-RA (CG31635), mRNA
0	0	1	7	3	NM_141854.2	CG14722-RA (CG14722), mRNA
0	0	1	5	6	NM_080522.2	CG9748-RA (bel), mRNA
0	0	1	4	3	NM_136235.2	CG9270-RA, transcript variant A (CG9270), mRNA
0	0	1	4	3	NM_206019.1	CG9270-RB, transcript variant B (CG9270), mRNA
0	0	1	4	2	NM_135939.2	CG4132-RA (pkaap), mRNA
0	0	1	3	9	NM_168171.1	CG32397-RA (CG32397), mRNA
0	0	1	3	7	NM_135729.1	CG15489-RA (CG15489), mRNA

Pathways (updated: 2024/04/26)

KEGG Pathway

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