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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 7611R-1 
 Symbol CG7611  Full Name CG7611 
 CG No CG7611  Old CG No CG7611 
 Synonyms CG7611 
 Accession No (Link to NCBI) NM_141069.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGATGGAGGCAGTGGCGATGA 
 Primer Seq. 3'
aatctagaggtaccGCTCGCTGCGAAGGACGTGAA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGATGGAGGC AgtGGNGATG ACAGCGTCGG CATCGGTGAT GAGAATCCAT CGGGCAGCAG 
0061 CgNCGCCACG AACGGACACG ACTCCAAACA CAACGGCTTC ATTGTCAACA ATAACGGCAG 
0121 CAGCAGTCGC NATCGTCGAC GGCGANGAAC AATCGGGAAA ACACCAGCTG CAGCGGTGTG 
0181 CAGCTGGACA AGTCCAACCA AGAGATCATC CGGCTGATCG GACAGTATCT GCATGACGTC 
0241 GGTCTCGATA AGTCAGTCCA AACGCTCATG TTGGAATCCG GATGCTACTT GGAACACCCC 
0301 TCTGCAACCA AGTTTAGGGA GCACGTCCTA ATGGGTGACT GGTCAAAGGC AGATTCAGAC 
0361 CTTAAGGACC TAGAGCCACT AATCGACAAT GGGAAATTGG CAACGATCNC CGAAATGAAG 
0421 TTCATATTGC TGGAGCAAAA GTATTTAGAG CATTTGGATG ATGGCAATCC CTTGGACGCC 
0481 CTTCACGTCC TTCGCAGCGA GC 
 in silico PCR Fragment
0001 CGATGGAGGC AGTGGCGATG ACAGCGTCGG CATCGGTGAT GAGAATCCAT CGGGCAGCAG 
0061 CGCCGCCACG AACGGACACG ACTCCAAACA CAACGGCTTC ATTGTCAACA ATAACGGCAG 
0121 CAGCAGTCGC -ATCGTCGAC GGCGA-GAAC AATCGGGAAA ACACCAGCTG CAGCGGTGTG 
0181 CAGCTGGACA AGTCCAACCA AGAGATCATC CGGCTGATCG GACAGTATCT GCATGACGTC 
0241 GGTCTCGATA AGTCAGTCCA AACGCTCATG TTGGAATCCG GATGCTACTT GGAACACCCC 
0301 TCTGCAACCA AGTTTAGGGA GCACGTCCTA ATGGGTGACT GGTCAAAGGC AGATTCAGAC 
0361 CTTAAGGACC TAGAGCCACT AATCGACAAT GGGAAATTGG CAACGATCAC CGAAATGAAG 
0421 TTCATATTGC TGGAGCAAAA GTATTTAGAG CATTTGGATG ATGGCAATCC CTTGGACGCC 
0481 CTTCACGTCC TTCGCAGCGA GC 
 Assemble Data
<PRE>

7611R-1.IR_full       1   CGATGGAGGCAGTGG<span class="snp"><tt>N</tt></span>GATGACAGCGTCGGCATCGGTGATGAGAATCCATCGGGCAGCAG 60
                          |||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     1   CGATGGAGGCAGTGG<span class="snp"><tt>C</tt></span>GATGACAGCGTCGGCATCGGTGATGAGAATCCATCGGGCAGCAG 60


7611R-1.IR_full       61  CG<span class="snp"><tt>N</tt></span>CGCCACGAACGGACACGACTCCAAACACAACGGCTTCATTGTCAACAATAACGGCAG 120
                          ||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     61  CG<span class="snp"><tt>C</tt></span>CGCCACGAACGGACACGACTCCAAACACAACGGCTTCATTGTCAACAATAACGGCAG 120


7611R-1.IR_full       121 CAGCAGTCGC<span class="snp"><tt>N</tt></span>ATCGTCGACGGCGA<span class="snp"><tt>N</tt></span>GAACAATCGGGAAAACACCAGCTGCAGCGGTGTG 180
                          ||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||
7611R-1.in silico     121 CAGCAGTCGC<span class="snp"><tt>-</tt></span>ATCGTCGACGGCGA<span class="snp"><tt>-</tt></span>GAACAATCGGGAAAACACCAGCTGCAGCGGTGTG 180


7611R-1.IR_full       181 CAGCTGGACAAGTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     181 CAGCTGGACAAGTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTC 240


7611R-1.IR_full       241 GGTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTGGAACACCCC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     241 GGTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTGGAACACCCC 300


7611R-1.IR_full       301 TCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTGGTCAAAGGCAGATTCAGAC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     301 TCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTGGTCAAAGGCAGATTCAGAC 360


7611R-1.IR_full       361 CTTAAGGACCTAGAGCCACTAATCGACAATGGGAAATTGGCAACGATC<span class="snp"><tt>N</tt></span>CCGAAATGAAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||
7611R-1.in silico     361 CTTAAGGACCTAGAGCCACTAATCGACAATGGGAAATTGGCAACGATC<span class="snp"><tt>A</tt></span>CCGAAATGAAG 420


7611R-1.IR_full       421 TTCATATTGCTGGAGCAAAAGTATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7611R-1.in silico     421 TTCATATTGCTGGAGCAAAAGTATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCC 480


7611R-1.IR_full       481 CTTCACGTCCTTCGCAGCGAGC 502
                          ||||||||||||||||||||||
7611R-1.in silico     481 CTTCACGTCCTTCGCAGCGAGC 502

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_168916.1  CG7611-RE, transcript variant E (CG7611), mRNA 
100   482  NM_168917.1  CG7611-RF, transcript variant F (CG7611), mRNA 
100   482  NM_168918.1  CG7611-RG, transcript variant G (CG7611), mRNA 
100   482  NM_168913.1  CG7611-RB, transcript variant B (CG7611), mRNA 
100   482  NM_168919.1  CG7611-RH, transcript variant H (CG7611), mRNA 
100   482  NM_168914.1  CG7611-RC, transcript variant C (CG7611), mRNA 
100   482  NM_168915.1  CG7611-RD, transcript variant D (CG7611), mRNA 
100   482  NM_141069.2  CG7611-RA, transcript variant A (CG7611), mRNA 
0   NM_079306.2  CG5940-RA, transcript variant A (CycA), mRNA 
0   11  NM_001014727.1  CG12154-RB, transcript variant B (oc), mRNA 
0   11  NM_078536.3  CG12154-RA, transcript variant A (oc), mRNA 
0   NM_165693.2  CG30004-RA (CG30004), mRNA 
0   NM_079694.2  CG5460-RC, transcript variant C (H), mRNA 
0   NM_169907.1  CG5460-RA, transcript variant A (H), mRNA 
0   NM_169908.1  CG5460-RD, transcript variant D (H), mRNA 
0   NM_169909.1  CG5460-RB, transcript variant B (H), mRNA 
0   NM_136859.2  CG8991-RA (Sobp), mRNA 
0   10  NM_141636.1  CG16777-RA (CG16777), mRNA 
0   NM_206363.2  CG17839-RB, transcript variant B (CG17839), mRNA 
0   NM_142444.1  CG18599-RA (CG18599), mRNA 
0   NM_079229.1  CG8624-RA, transcript variant A (melt), mRNA 
0   NM_001014572.1  CG8624-RB, transcript variant B (melt), mRNA 
0   10  12  NM_164696.1  CG31635-RA (CG31635), mRNA 
0   NM_141854.2  CG14722-RA (CG14722), mRNA 
0   NM_080522.2  CG9748-RA (bel), mRNA 
0   NM_136235.2  CG9270-RA, transcript variant A (CG9270), mRNA 
0   NM_206019.1  CG9270-RB, transcript variant B (CG9270), mRNA 
0   NM_135939.2  CG4132-RA (pkaap), mRNA 
0   NM_168171.1  CG32397-RA (CG32397), mRNA 
0   NM_135729.1  CG15489-RA (CG15489), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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