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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
discarded
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
7507R-3 |
| Symbol |
Dhc64C |
Full Name |
Dynein heavy chain 64C |
| CG No |
CG7507 |
Old CG No |
CG7507 |
| Synonyms |
Dhc, dhc, dhc64C, Dhc64, DHC, Dhc64c, cDhc, DHC64C, CG7507, CD, cDhc64C, Cdhc, Fs(3)Lab, HMW MAP, Lab, Fs(3)Laborc, l(3)64Ca, Fs(3)Sz18, Dhc64C |
| Accession No (Link to NCBI) |
NM_079205.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTGACTCCTTGGAGAACCCCGA |
| Primer Seq. 3' |
aatctagaggtaccCCGACTCCTTGACGTACGACT |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TGACTCCTTG GAGAACCCCG ATACATCGGT GGATCCAATC GTGAACCTGT CCATTGCGAA
0061 CTACGATGCA TTTGCCAATT ATCTTCGGAA GGCGGTGACC ATTTTGCTGC CGGAGGACGA
0121 TGTGGTTCCC GCATCGCTGA ACAATGCTTT GGATGATCCC ATCAACCAGG ACACCATCCG
0181 GAAGTTCCTA TCGGATCCCC AGGTGCAGGC GCTTTACGTC CAACGCAATT GCATTAAAGA
0241 GGACGATTCT GAGCAGCCGG CGGAGGGCGA GGACGAGAAG GAGCAGGTAA CCTACCAAAT
0301 CAGCAACGAT GTTCACTTCA CCAACAGTCG GATGGCATCT TTGGCCTGCA TCAAGCGCGG
0361 CCTGGTCGTG GAGGCGGACA AGTCGATCCA TTCGCAGCTG CGGCTGATCA ACTTCTCGGA
0421 CGGATCTCCC TACGAGACGC TGCACGCTTT CATCAGCAAG TCCCTGGCGC CTTACTTCAA
0481 GTCGTACGTC AAGGAGTCGG |
| in silico PCR Fragment |
0001 TGACTCCTTG GAGAACCCCG ATACATCGGT GGATCCAATC GTGAACCTGT CCATTGCGAA
0061 CTATGATGCA TTTGCCAATT ATCTTCGGAA GGCGGTGACC ATTTTGCTGC CGGAGGACGA
0121 TGTGGTTCCC GCATCGCTGA ACGATGCTCT GGACGATCCC GTCAACCAGG ACACCATCCG
0181 GAAGTTCCTC TCGGATCCCC AGGTGCAGGC GCTTTACGTC CAACGCAATT GCATTAAAGA
0241 GGACGATTCT GAGCAGCCGG CGGAGGGCGA GGACGAGAAG GAGCAGGTAA CCTACCAAAT
0301 CAGCAACGAT GTTCACTTCA CCAACAGTCG GATGGCATCT TTGGCCTGCA TCAAGCGCGG
0361 CCTGGTCGTG GAGGCGGACA AGTCGATCCA TTCGCAGCTG CGGCTGATCA ACTTCTCGGA
0421 CGGATCTCCC TACGAGACGC TGCACGCTTT CATCAGCAAG TCCCTGGCGC CTTACTTCAA
0481 GTCGTACGTC AAGGAGTCGG |
| Assemble Data |
<PRE>
7507R-3.IR_full 1 TGACTCCTTGGAGAACCCCGATACATCGGTGGATCCAATCGTGAACCTGTCCATTGCGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7507R-3.in silico 1 TGACTCCTTGGAGAACCCCGATACATCGGTGGATCCAATCGTGAACCTGTCCATTGCGAA 60
7507R-3.IR_full 61 CTA<span class="snp"><tt>C</tt></span>GATGCATTTGCCAATTATCTTCGGAAGGCGGTGACCATTTTGCTGCCGGAGGACGA 120
|||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7507R-3.in silico 61 CTA<span class="snp"><tt>T</tt></span>GATGCATTTGCCAATTATCTTCGGAAGGCGGTGACCATTTTGCTGCCGGAGGACGA 120
7507R-3.IR_full 121 TGTGGTTCCCGCATCGCTGAAC<span class="snp"><tt>A</tt></span>ATGCT<span class="snp"><tt>T</tt></span>TGGA<span class="snp"><tt>T</tt></span>GATCCC<span class="snp"><tt>A</tt></span>TCAACCAGGACACCATCCG 180
||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||<span class="snp"><tt> </tt></span>||||<span class="snp"><tt> </tt></span>||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||
7507R-3.in silico 121 TGTGGTTCCCGCATCGCTGAAC<span class="snp"><tt>G</tt></span>ATGCT<span class="snp"><tt>C</tt></span>TGGA<span class="snp"><tt>C</tt></span>GATCCC<span class="snp"><tt>G</tt></span>TCAACCAGGACACCATCCG 180
7507R-3.IR_full 181 GAAGTTCCT<span class="snp"><tt>A</tt></span>TCGGATCCCCAGGTGCAGGCGCTTTACGTCCAACGCAATTGCATTAAAGA 240
|||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||
7507R-3.in silico 181 GAAGTTCCT<span class="snp"><tt>C</tt></span>TCGGATCCCCAGGTGCAGGCGCTTTACGTCCAACGCAATTGCATTAAAGA 240
7507R-3.IR_full 241 GGACGATTCTGAGCAGCCGGCGGAGGGCGAGGACGAGAAGGAGCAGGTAACCTACCAAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7507R-3.in silico 241 GGACGATTCTGAGCAGCCGGCGGAGGGCGAGGACGAGAAGGAGCAGGTAACCTACCAAAT 300
7507R-3.IR_full 301 CAGCAACGATGTTCACTTCACCAACAGTCGGATGGCATCTTTGGCCTGCATCAAGCGCGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7507R-3.in silico 301 CAGCAACGATGTTCACTTCACCAACAGTCGGATGGCATCTTTGGCCTGCATCAAGCGCGG 360
7507R-3.IR_full 361 CCTGGTCGTGGAGGCGGACAAGTCGATCCATTCGCAGCTGCGGCTGATCAACTTCTCGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7507R-3.in silico 361 CCTGGTCGTGGAGGCGGACAAGTCGATCCATTCGCAGCTGCGGCTGATCAACTTCTCGGA 420
7507R-3.IR_full 421 CGGATCTCCCTACGAGACGCTGCACGCTTTCATCAGCAAGTCCCTGGCGCCTTACTTCAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7507R-3.in silico 421 CGGATCTCCCTACGAGACGCTGCACGCTTTCATCAGCAAGTCCCTGGCGCCTTACTTCAA 480
7507R-3.IR_full 481 GTCGTACGTCAAGGAGTCGG 500
||||||||||||||||||||
7507R-3.in silico 481 GTCGTACGTCAAGGAGTCGG 500
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
7 |
NM_079205.3 |
CG7507-RA, transcript variant A (Dhc64C), mRNA |
| 100 |
482 |
0 |
0 |
7 |
NM_168103.1 |
CG7507-RB, transcript variant B (Dhc64C), mRNA |
| 0 |
0 |
3 |
7 |
7 |
NM_165699.1 |
CG1623-RB, transcript variant B (CG1623), mRNA |
| 0 |
0 |
3 |
7 |
7 |
NM_165700.1 |
CG1623-RD, transcript variant D (CG1623), mRNA |
| 0 |
0 |
3 |
7 |
7 |
NM_165698.1 |
CG1623-RA, transcript variant A (CG1623), mRNA |
| 0 |
0 |
3 |
7 |
7 |
NM_136676.2 |
CG1623-RC, transcript variant C (CG1623), mRNA |
| 0 |
0 |
3 |
7 |
7 |
NM_165701.1 |
CG1623-RE, transcript variant E (CG1623), mRNA |
| 0 |
0 |
3 |
2 |
6 |
NM_139818.1 |
CG8640-RA (CG8640), mRNA |
| 0 |
0 |
3 |
2 |
4 |
NM_141833.2 |
CG6791-RB, transcript variant B (CG6791), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_058006.3 |
CG2720-RA (Hop), mRNA |
| 0 |
0 |
2 |
5 |
3 |
NM_138247.1 |
CG9134-RB, transcript variant B (CG9134), mRNA |
| 0 |
0 |
2 |
4 |
6 |
NM_132302.3 |
CG7055-RA (dalao), mRNA |
| 0 |
0 |
2 |
4 |
4 |
NM_137273.2 |
CG8060-RA (CG8060), mRNA |
| 0 |
0 |
2 |
2 |
5 |
NM_132343.2 |
CG3002-RB (Gga), mRNA |
| 0 |
0 |
1 |
8 |
9 |
NM_142899.1 |
CG10152-RA (beat-IV), mRNA |
| 0 |
0 |
1 |
7 |
2 |
NM_079974.2 |
CG3870-RA (chrw), mRNA |
| 0 |
0 |
1 |
6 |
6 |
NM_140952.1 |
CG5585-RA (CG5585), mRNA |
| 0 |
0 |
1 |
5 |
13 |
NM_175960.3 |
CG33196-RB (dp), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_137249.1 |
CG18243-RA (Ptp52F), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_168156.1 |
CG7018-RA, transcript variant A (Ets65A), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_139824.2 |
CG8629-RA (CG8629), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_080013.2 |
CG6050-RA (EfTuM), mRNA |
| 0 |
0 |
1 |
3 |
13 |
NM_169094.1 |
CG1093-RA, transcript variant A (plx), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_137714.2 |
CG9437-RA (CG9437), mRNA |
| 0 |
0 |
1 |
2 |
13 |
NM_167649.1 |
CG32533-RA (CG32533), mRNA |
| 0 |
0 |
1 |
2 |
8 |
NM_205886.1 |
CG11838-RB, transcript variant B (Oseg3), mRNA |
| 0 |
0 |
1 |
2 |
8 |
NM_134686.1 |
CG11838-RA, transcript variant A (Oseg3), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_141009.2 |
CG32432-RA (CG32432), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_137529.2 |
CG15093-RB, transcript variant B (CG15093), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_166306.1 |
CG15093-RA, transcript variant A (CG15093), mRNA |
|
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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