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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
7486R-1 |
| Symbol |
Dredd |
Full Name |
Death related ced-3/Nedd2-like protein |
| CG No |
CG7486 |
Old CG No |
CG7486 |
| Synonyms |
DREDD, dredd, Dcp-2/Dredd, Dcp-2, CG7486, EG:115C2.9, DCP-2/DREDD, DCP-2, dcp-2/dredd, Dcp2, DCP2, unnamed, anon-1BCa, Redd, Dedd, Dredd |
| Accession No (Link to NCBI) |
NM_057903.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
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| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Nagata R, Nakamura M, Sanaki Y, Igaki T.
Cell Competition Is Driven by Autophagy.
Dev Cell (2019) 51(1) 99-112.e4
[
PubMed ID = 31543447
]
[
RRC reference
]
Bangi E, Pitsouli C, Rahme LG, Cagan R, Apidianakis Y.
Immune response to bacteria induces dissemination of Ras-activated Drosophila hindgut cells.
EMBO Rep (2012) 13(6) 569-76
[
PubMed ID = 22498775
]
[
RRC reference
]
Leulier F, Ribeiro PS, Palmer E, Tenev T, Takahashi K, Robertson D, Zachariou A, Pichaud F, Ueda R, Meier P.
Systematic in vivo RNAi analysis of putative components of the Drosophila cell death machinery.
Cell Death Differ (2006) 13(10) 1663-74
[
PubMed ID = 16485033
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgACCACTCGGATGCCACCTACA |
| Primer Seq. 3' |
aatctagaggtaccTGCTTGCGCCTGCAGACCGTT |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 ACCACTCGGA TGCCACCTAC ATTCTGCAGA AACTTTTGGC CATGACACGA TCAGACTTCC
0061 CGCAAAGTGA TCTACTCATA AAGTTCGCCA AGTCCCGGCC AGAAACCTGG AGAAGACATC
0121 TCGTGGAGGC CCTGTGCATT ATTGGGGCCC GCAAGGTGCN TCCGGAGACT GGGTTTCTGC
0181 TGGCAGGAGC TGCGAATGCA CTACTTGCCG CATATCGCTG GGATCACGCT GCATGTCCAT
0241 CCTCTGTTGA AGAGCCTCTA CAGGATGTGT GAGGAGTTGT CGTTGGTGCA GAGTGGCCGC
0301 NTTGCTCCTA GATGTTCGCG AAAAGGTGGA GAGCCAGCAG GCAGGAGATC CACTTCGCTT
0361 CTACGATCCC GCGTACCTGG AGATCTTTTT GCTGGACTGG CTGACCAGAA GGAGCATAAA
0421 GTTAGGGGAC ATAANATgcC GCAGGCAGCG ATGTTCAGCT GCTGGTCGGC CATTTGAAGT
0481 CCAACGGTCT GCAGGCGCAA GCA |
| in silico PCR Fragment |
0001 ACCACTCGGA TGCCACCTAC ATTCTGCAGA AACTTTTGGC CATGACACGA TCAGACTTCC
0061 CGCAAAGTGA TCTACTCATA AAGTTCGCCA AGTCCCGGCC AGAAACCTGG AGAAGACATC
0121 TCGTGGAGGC CCTGTGCATT ATTGGGGCCC GCAAGGTGC- TCCGGAGACT GGGTTTCTGC
0181 TGGCAGGAGC TGCGAATGCA CTACTTGCCG CATATCGCTG GGATCACGCT GCATGTCCAT
0241 CCTCTGTTGA AGAGCCTCTA CAGGATGTGT GAGGAGTTGT CGTTGGTGCA GAGTGGCCGC
0301 -TTGCTCCTA GATGTTCGCG AAAAGGTGGA GAGCCAGCAG GCAGGAGATC CACTTCGCTT
0361 CTACGATCCC GCGTACCTGG AGATCTTTTT GCTGGACTGG CTGACCAGAA GGAGCATAAA
0421 GTTAGGGGAC ATAA-ATGCC GCAGGCAGCG ATGTTCAGCT GCTGGTCGGC CATTTGAAGT
0481 CCAACGGTCT GCAGGCGCAA GCA |
| Assemble Data |
7486R-1.IR_full 1 ACCACTCGGATGCCACCTACATTCTGCAGAAACTTTTGGCCATGACACGATCAGACTTCC 60
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7486R-1.in silico 1 ACCACTCGGATGCCACCTACATTCTGCAGAAACTTTTGGCCATGACACGATCAGACTTCC 60
7486R-1.IR_full 61 CGCAAAGTGATCTACTCATAAAGTTCGCCAAGTCCCGGCCAGAAACCTGGAGAAGACATC 120
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7486R-1.in silico 61 CGCAAAGTGATCTACTCATAAAGTTCGCCAAGTCCCGGCCAGAAACCTGGAGAAGACATC 120
7486R-1.IR_full 121 TCGTGGAGGCCCTGTGCATTATTGGGGCCCGCAAGGTGCNTCCGGAGACTGGGTTTCTGC 180
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7486R-1.in silico 121 TCGTGGAGGCCCTGTGCATTATTGGGGCCCGCAAGGTGC-TCCGGAGACTGGGTTTCTGC 180
7486R-1.IR_full 181 TGGCAGGAGCTGCGAATGCACTACTTGCCGCATATCGCTGGGATCACGCTGCATGTCCAT 240
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7486R-1.in silico 181 TGGCAGGAGCTGCGAATGCACTACTTGCCGCATATCGCTGGGATCACGCTGCATGTCCAT 240
7486R-1.IR_full 241 CCTCTGTTGAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGGTGCAGAGTGGCCGC 300
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7486R-1.in silico 241 CCTCTGTTGAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGGTGCAGAGTGGCCGC 300
7486R-1.IR_full 301 TTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAGCAGGCAGGAGATCCACTTCGCTT 359
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7486R-1.in silico 301 TTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAGCAGGCAGGAGATCCACTTCGCTT 359
7486R-1.IR_full 361 CTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTGGCTGACCAGAAGGAGCATAAA 419
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7486R-1.in silico 361 CTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTGGCTGACCAGAAGGAGCATAAA 419
7486R-1.IR_full 421 GTTAGGGGACATAANATGCCGCAGGCAGCGATGTTCAGCTGCTGGTCGGCCATTTGAAGT 479
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7486R-1.in silico 421 GTTAGGGGACATAA-ATGCCGCAGGCAGCGATGTTCAGCTGCTGGTCGGCCATTTGAAGT 479
7486R-1.IR_full 481 CCAACGGTCTGCAGGCGCAAGCA 502
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7486R-1.in silico 481 CCAACGGTCTGCAGGCGCAAGCA 502
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_057902.3 |
CG7486-RC, transcript variant C (Dredd), mRNA |
| 100 |
482 |
0 |
0 |
0 |
NM_057901.3 |
CG7486-RB, transcript variant B (Dredd), mRNA |
| 100 |
482 |
0 |
0 |
0 |
NM_057903.3 |
CG7486-RA, transcript variant A (Dredd), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_167515.1 |
CG4239-RA, transcript variant A (CG4239), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_132894.2 |
CG4239-RC, transcript variant C (CG4239), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_167516.1 |
CG4239-RB, transcript variant B (CG4239), mRNA |
| 0 |
0 |
2 |
4 |
5 |
NM_137235.2 |
CG8399-RA (CG8399), mRNA |
| 0 |
0 |
2 |
4 |
3 |
NM_142668.2 |
CG3822-RA (CG3822), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_078935.2 |
CG2160-RA (Socs44A), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_135896.3 |
CG4168-RA (CG4168), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_167729.1 |
CG15445-RA, transcript variant A (CG15445), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_134592.2 |
CG15445-RD, transcript variant D (CG15445), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_167730.1 |
CG15445-RB, transcript variant B (CG15445), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_167731.1 |
CG15445-RC, transcript variant C (CG15445), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_136041.1 |
CG10231-RA (Pde11), mRNA |
| 0 |
0 |
1 |
2 |
8 |
NM_001043220.1 |
CG34127-RA (CG34127), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_079000.2 |
CG3879-RA (Mdr49), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_078872.4 |
CG10302-RA (bsf), mRNA |
| 0 |
0 |
0 |
9 |
133 |
NM_078751.3 |
CG3047-RA (Sgs1), mRNA |
| 0 |
0 |
0 |
6 |
6 |
NM_079223.2 |
CG10129-RA (ndl), mRNA |
| 0 |
0 |
0 |
6 |
4 |
NM_166606.1 |
CG30181-RA (CG30181), mRNA |
| 0 |
0 |
0 |
5 |
9 |
NM_136085.2 |
CG10650-RA (CG10650), mRNA |
| 0 |
0 |
0 |
5 |
7 |
NM_169775.1 |
CG7467-RA, transcript variant A (osa), mRNA |
| 0 |
0 |
0 |
5 |
7 |
NM_079668.2 |
CG7467-RB, transcript variant B (osa), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_175954.1 |
CG33123-RA (CG33123), mRNA |
| 0 |
0 |
0 |
5 |
2 |
NM_141046.3 |
CG7605-RA (Rab26), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_133165.2 |
CG1079-RA (CG1079), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_137854.2 |
CG4373-RA (Cyp6d2), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_058135.2 |
CG10917-RA (fj), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_136657.2 |
CG1818-RA (Updo), mRNA |
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