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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 7188R-3 
 Symbol CG7188  Full Name CG7188 
 CG No CG7188  Old CG No CG7188 
 Synonyms d-BI-1, CG7188 
 Accession No (Link to NCBI) NM_139948.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgCCGCTCCTCGGCTATATATGC 
 Primer Seq. 3' 
aatctagaggtaccAGTTTTGTTCTGGCGGCGTTC 
 Predicted Fragment Size 
423 
 IR fragment full Seq 
0001 CCGCTCCTCG GCTATATATG CAGCATAAAT CCGGCAATAA TNCCTGTCTG CCCTTACGGG 
0061 CACCTTCGTC ACCTTCATCT CGCTCTCCTT GTCCGCCCTT CTGGCCGAGC AGGGCAAGTA 
0121 CCTCTATCTG GGTGGGATGC TGGTTAGCGT CATCAACACC ATGGCGCTGC TGAGTCTCTT 
0181 TAACATGGTC TTCAAGTCCT ACTTCGTGCA AGTGACTCAA CTTTACGTCG GCGTTTTCGT 
0241 TATGGCTGCC TTCATCGTCT ACGATACACA GAACATTGTG GAAAAGTGCC GAAACGGAAA 
0301 TCGAGATGTC GTGCAGCACG CTTTAGATTT GTTCTTCGAT GTACTCAGCA TGTTCCGCCG 
0361 TTTGCTGATT ATACTGACGC AAAAGGAGGA GCGAAAACAG AATGAACGCC GCCAGAACAA 
0421 AACT 
 in silico PCR Fragment 
0001 CCGCTCCTCG GCTATATATG CAGCATAAAT CCGGCAATAA T-CCTGTCTG CCCTTACGGG 
0061 CACCTTCGTC ACCTTCATCT CGCTCTCCTT GTCCGCCCTT CTGGCCGAGC AGGGCAAGTA 
0121 CCTCTATCTG GGTGGGATGC TGGTTAGCGT CATCAACACC ATGGCGCTGC TGAGTCTCTT 
0181 TAACATGGTC TTCAAGTCCT ACTTCGTGCA AGTGACTCAA CTTTACGTCG GCGTTTTCGT 
0241 TATGGCTGCC TTCATCGTCT ACGATACACA GAACATTGTG GAGAAGTGCC GAAACGGAAA 
0301 TCGAGATGTG GTGCAGCACG CTTTAGATTT GTTCTTCGAT GTACTCAGCA TGTTCCGCCG 
0361 TTTGCTGATT ATACTGACGC AAAAGGAGGA GCGAAAACAG AATGAACGCC GCCAGAACAA 
0421 AACT 
 Assemble Data 
<PRE>

7188R-3.IR_full       1   CCGCTCCTCGGCTATATATGCAGCATAAATCCGGCAATAAT<span class="snp"><tt>N</tt></span>CCTGTCTGCCCTTACGGG 60
                          |||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||
7188R-3.in silico     1   CCGCTCCTCGGCTATATATGCAGCATAAATCCGGCAATAAT<span class="snp"><tt>-</tt></span>CCTGTCTGCCCTTACGGG 60


7188R-3.IR_full       61  CACCTTCGTCACCTTCATCTCGCTCTCCTTGTCCGCCCTTCTGGCCGAGCAGGGCAAGTA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7188R-3.in silico     61  CACCTTCGTCACCTTCATCTCGCTCTCCTTGTCCGCCCTTCTGGCCGAGCAGGGCAAGTA 120


7188R-3.IR_full       121 CCTCTATCTGGGTGGGATGCTGGTTAGCGTCATCAACACCATGGCGCTGCTGAGTCTCTT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7188R-3.in silico     121 CCTCTATCTGGGTGGGATGCTGGTTAGCGTCATCAACACCATGGCGCTGCTGAGTCTCTT 180


7188R-3.IR_full       181 TAACATGGTCTTCAAGTCCTACTTCGTGCAAGTGACTCAACTTTACGTCGGCGTTTTCGT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7188R-3.in silico     181 TAACATGGTCTTCAAGTCCTACTTCGTGCAAGTGACTCAACTTTACGTCGGCGTTTTCGT 240


7188R-3.IR_full       241 TATGGCTGCCTTCATCGTCTACGATACACAGAACATTGTGGA<span class="snp"><tt>A</tt></span>AAGTGCCGAAACGGAAA 300
                          ||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||
7188R-3.in silico     241 TATGGCTGCCTTCATCGTCTACGATACACAGAACATTGTGGA<span class="snp"><tt>G</tt></span>AAGTGCCGAAACGGAAA 300


7188R-3.IR_full       301 TCGAGATGT<span class="snp"><tt>C</tt></span>GTGCAGCACGCTTTAGATTTGTTCTTCGATGTACTCAGCATGTTCCGCCG 360
                          |||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||
7188R-3.in silico     301 TCGAGATGT<span class="snp"><tt>G</tt></span>GTGCAGCACGCTTTAGATTTGTTCTTCGATGTACTCAGCATGTTCCGCCG 360


7188R-3.IR_full       361 TTTGCTGATTATACTGACGCAAAAGGAGGAGCGAAAACAGAATGAACGCCGCCAGAACAA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7188R-3.in silico     361 TTTGCTGATTATACTGACGCAAAAGGAGGAGCGAAAACAGAATGAACGCCGCCAGAACAA 420


7188R-3.IR_full       421 AACT 424
                          ||||
7188R-3.in silico     421 AACT 424

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   545  0  0  1  NM_168262.1  CG7188-RB, transcript variant B (CG7188), mRNA 
71.19   388  5  2  3  NM_139948.2  CG7188-RA, transcript variant A (CG7188), mRNA 
0   0  4  3  4  NM_167233.1  CG32687-RA (CG32687), mRNA 
0   0  3  7  3  NM_168168.1  CG32396-RA (CG32396), mRNA 
0   0  2  3  6  NM_140914.2  CG7749-RA, transcript variant A (fat2), mRNA 
0   0  2  3  6  NM_001031967.1  CG7749-RB, transcript variant B (fat2), mRNA 
0   0  2  3  2  NM_131941.2  CG11436-RA (CG11436), mRNA 
0   0  2  2  3  NM_141993.2  CG7518-RB, transcript variant B (CG7518), mRNA 
0   0  2  2  3  NM_169489.1  CG7518-RA, transcript variant A (CG7518), mRNA 
0   0  1  5  7  NM_164494.1  CG31689-RB, transcript variant B (CG31689), mRNA 
0   0  1  5  7  NM_164493.1  CG31689-RA, transcript variant A (CG31689), mRNA 
0   0  1  5  7  NM_164495.1  CG31689-RD, transcript variant D (CG31689), mRNA 
0   0  1  5  7  NM_134859.2  CG31689-RC, transcript variant C (CG31689), mRNA 
0   0  1  5  2  NM_168129.1  CG5486-RA, transcript variant A (Ubp64E), mRNA 
0   0  1  5  2  NM_206279.1  CG5486-RC, transcript variant C (Ubp64E), mRNA 
0   0  1  5  2  NM_079213.2  CG5486-RB, transcript variant B (Ubp64E), mRNA 
0   0  1  3  13  NM_080254.2  CG6392-RA (cmet), mRNA 
0   0  1  3  5  NM_132890.2  CG3692-RA (CalpC), mRNA 
0   0  1  3  3  NM_079757.3  CG5610-RA (nAcRalpha-96Aa), mRNA 
0   0  1  3  2  NM_132956.1  CG9086-RA (CG9086), mRNA 
0   0  1  2  3  NM_205909.1  CG9124-RB, transcript variant B (eIF-3p40), mRNA 
0   0  1  2  3  NM_080095.2  CG9124-RA, transcript variant A (eIF-3p40), mRNA 
0   0  1  2  2  NM_167865.1  CG32333-RA, transcript variant A (CG32333), mRNA 
0   0  1  2  2  NM_170563.1  CG1815-RB, transcript variant B (CG1815), mRNA 
0   0  1  2  2  NM_170562.1  CG1815-RA, transcript variant A (CG1815), mRNA 
0   0  1  2  2  NM_143624.2  CG1815-RC, transcript variant C (CG1815), mRNA 
0   0  0  5  10  NM_137885.2  CG3682-RA, transcript variant A (PIP5K59B), mRNA 
0   0  0  5  10  NM_001043101.1  CG3682-RC, transcript variant C (PIP5K59B), mRNA 
0   0  0  5  9  NM_166567.1  CG3682-RB, transcript variant B (PIP5K59B), mRNA 
0   0  0  5  6  NM_169191.2  CG31146-RD (CG31146), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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