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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6931R-3 
 Symbol CG6931  Full Name CG6931 
 CG No CG6931  Old CG No CG6931 
 Synonyms CG6931 
 Accession No (Link to NCBI) NM_140279.2 
 Inserted Chr. lll 
 Insertional Mutation  semi-lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
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 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTGATGAACAAGAAGCTCTCGC 
 Primer Seq. 3' 
aatctagaggtaccCCACCTCGTTTACGTTGTTGA 
 Predicted Fragment Size 
504 
 IR fragment full Seq 
0001 TGATGAACAA GAAGCTCTCG CCAGAgGATG CATTTTATGA AAATTTGACC CTCGGTCTGA 
0061 TAAGGACGCT ATCCAATGTG CCAAGGGTAT GTAATGTGAC GTTGGAGCGA CGACAACCTC 
0121 TGAATGCCTG CCAGTTGGTG AATTGGGAGC AGAGGCACTG CGTCTACCTC CCGGAAGATA 
0181 TGAAGAAGTT CTACCTATCT TCTGATGGCT TTATCTTAAA CTGGAGCTAC CAATATGCTC 
0241 CCAACGATAT TAGGCGCGTG GGTCACATTC ACTTTCCGCA CTTGCTGCAA GTGACCCTTT 
0301 TGCGGGAGAA CATAGAAACC ACATCGAGCC ACTCCAGCAA TTCGACGGCT GTGCCCAATA 
0361 GCAACTCGGA TGTTGTGGGA GCAGCCGGGA GCTCTCAATC CCTTCCAGCA CCTATTGCCA 
0421 CCGGAAAAGA CAAGTGNGGC AATGCCACGC CTATTATAAC GGCCAAATCG AAAATATTTG 
0481 AGATCAACAA CGTAAACGAC NGTgg 
 in silico PCR Fragment 
0001 TGATGAACAA GAAGCTCTCG CCAGAGGATG CATTTTATGA AAATTTGACC CTCGGTCTGA 
0061 TAAGGACGCT ATCCAATGTG CCAAGGGTAT GTAATGTGAC GTTGGAGCGA CGACAACCTC 
0121 TGAATGCCTG CCAGTTGGTG AATTGGGAGC AGAGGCACTG CGTCTACCTC CCGGAAGATA 
0181 TGAAGAAGTT CTACCTATCT TCTGATGGCT TTATCTTAAA CTGGAGCTAC CAATATGCTC 
0241 CCAACGATAT TAGGCGCGTG GGTCACATTC ACTTTCCGCA CTTGCTGCAA GTGACCCTTT 
0301 TGCGGGAGAA CATAGAAACC ACATCGAGCC ACTCCAGCAA TTCGACGGCT GTGCCCAATA 
0361 GCAACTCGGA TGTTGTGGGA GCAGCCGGGA GCTCTCAATC CCTTCCAGCA CCTATTGCCA 
0421 CCGGAAAAGA CAAGTGGGGC AATGCCACGC CTATTATAAC GGCCAAATCG AAAATATTTG 
0481 AGATCAACAA CGTAAACGA- GGTGG 
 Assemble Data 
<PRE>

6931R-3.IR_full       1   TGATGAACAAGAAGCTCTCGCCAGAGGATGCATTTTATGAAAATTTGACCCTCGGTCTGA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6931R-3.in silico     1   TGATGAACAAGAAGCTCTCGCCAGAGGATGCATTTTATGAAAATTTGACCCTCGGTCTGA 60


6931R-3.IR_full       61  TAAGGACGCTATCCAATGTGCCAAGGGTATGTAATGTGACGTTGGAGCGACGACAACCTC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6931R-3.in silico     61  TAAGGACGCTATCCAATGTGCCAAGGGTATGTAATGTGACGTTGGAGCGACGACAACCTC 120


6931R-3.IR_full       121 TGAATGCCTGCCAGTTGGTGAATTGGGAGCAGAGGCACTGCGTCTACCTCCCGGAAGATA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6931R-3.in silico     121 TGAATGCCTGCCAGTTGGTGAATTGGGAGCAGAGGCACTGCGTCTACCTCCCGGAAGATA 180


6931R-3.IR_full       181 TGAAGAAGTTCTACCTATCTTCTGATGGCTTTATCTTAAACTGGAGCTACCAATATGCTC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6931R-3.in silico     181 TGAAGAAGTTCTACCTATCTTCTGATGGCTTTATCTTAAACTGGAGCTACCAATATGCTC 240


6931R-3.IR_full       241 CCAACGATATTAGGCGCGTGGGTCACATTCACTTTCCGCACTTGCTGCAAGTGACCCTTT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6931R-3.in silico     241 CCAACGATATTAGGCGCGTGGGTCACATTCACTTTCCGCACTTGCTGCAAGTGACCCTTT 300


6931R-3.IR_full       301 TGCGGGAGAACATAGAAACCACATCGAGCCACTCCAGCAATTCGACGGCTGTGCCCAATA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6931R-3.in silico     301 TGCGGGAGAACATAGAAACCACATCGAGCCACTCCAGCAATTCGACGGCTGTGCCCAATA 360


6931R-3.IR_full       361 GCAACTCGGATGTTGTGGGAGCAGCCGGGAGCTCTCAATCCCTTCCAGCACCTATTGCCA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6931R-3.in silico     361 GCAACTCGGATGTTGTGGGAGCAGCCGGGAGCTCTCAATCCCTTCCAGCACCTATTGCCA 420


6931R-3.IR_full       421 CCGGAAAAGACAAGTG<span class="snp"><tt>N</tt></span>GGCAATGCCACGCCTATTATAACGGCCAAATCGAAAATATTTG 480
                          ||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||||||||||
6931R-3.in silico     421 CCGGAAAAGACAAGTG<span class="snp"><tt>G</tt></span>GGCAATGCCACGCCTATTATAACGGCCAAATCGAAAATATTTG 480


6931R-3.IR_full       481 AGATCAACAACGTAAACGA<span class="snp"><tt>C</tt></span><span class="snp"><tt>N</tt></span>GTGG 505
                          |||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span><span class="snp"><tt>&nbsp;</tt></span>||||
6931R-3.in silico     481 AGATCAACAACGTAAACGA<span class="snp"><tt>-</tt></span><span class="snp"><tt>G</tt></span>GTGG 505

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   486  0  0  2  NM_140279.2  CG6931-RA (CG6931), mRNA 
0   0  2  5  3  NM_140351.2  CG11010-RA (Ent3), mRNA 
0   0  2  4  3  NM_001032097.1  CG3481-RH, transcript variant H (Adh), mRNA 
0   0  2  4  3  NM_001032098.1  CG3481-RF, transcript variant F (Adh), mRNA 
0   0  2  4  3  NM_001032101.1  CG3484-RB, transcript variant B (Adhr), mRNA 
0   0  2  4  3  NM_058147.3  CG3484-RA, transcript variant A (Adhr), mRNA 
0   0  2  2  2  NM_135265.1  CG4971-RA (Wnt10), mRNA 
0   0  1  4  4  NM_164746.1  CG4889-RB, transcript variant B (wg), mRNA 
0   0  1  4  4  NM_078778.3  CG4889-RA, transcript variant A (wg), mRNA 
0   0  1  3  15  NM_144448.2  CG1915-RC, transcript variant C (sls), mRNA 
0   0  1  2  10  NM_079937.2  CG1915-RA, transcript variant A (sls), mRNA 
0   0  1  2  3  NM_144349.2  CG12132-RA (c11.1), mRNA 
0   0  1  2  2  NM_001014614.1  CG4067-RD, transcript variant D (pug), mRNA 
0   0  1  2  2  NM_169350.1  CG4067-RB, transcript variant B (pug), mRNA 
0   0  1  2  2  NM_057906.3  CG4067-RA, transcript variant A (pug), mRNA 
0   0  1  2  2  NM_169351.1  CG4067-RC, transcript variant C (pug), mRNA 
0   0  0  7  2  NM_143056.1  CG17462-RA (CG17462), mRNA 
0   0  0  4  8  NM_001038712.1  CG33978-RA (CG33978), mRNA 
0   0  0  4  7  NM_206153.1  CG33130-RC, transcript variant C (l(2)k07433), mRNA 
0   0  0  4  7  NM_176218.1  CG33130-RA, transcript variant A (l(2)k07433), mRNA 
0   0  0  4  7  NM_206154.1  CG33130-RB, transcript variant B (l(2)k07433), mRNA 
0   0  0  4  4  NM_143064.1  CG6369-RA (Smg6), mRNA 
0   0  0  4  4  NM_145757.2  CG30084-RC, transcript variant C (CG30084), mRNA 
0   0  0  4  4  NM_001032250.1  CG30084-RE, transcript variant E (CG30084), mRNA 
0   0  0  4  4  NM_001032249.1  CG30084-RF, transcript variant F (CG30084), mRNA 
0   0  0  4  4  NM_137214.3  CG30084-RA, transcript variant A (CG30084), mRNA 
0   0  0  4  4  NM_001043086.1  CG30084-RG, transcript variant G (CG30084), mRNA 
0   0  0  4  3  NM_166935.1  CG2924-RA, transcript variant A (CG2924), mRNA 
0   0  0  4  3  NM_130638.2  CG2924-RC, transcript variant C (CG2924), mRNA 
0   0  0  4  3  NM_142956.1  CG18428-RA (CG18428), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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