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Notification of resumption of orders:

Orders have been suspended as a response to the COVID-19 infection, but it will be resumed today, May 11. However, we would like to set our organizational framework that prioritizes the maintenance of stocks for the time being. In addition, due to delays in delivery of postal items, it is expected that the flies you ordered will not reach you in normal period. We apologize for the inconvenience.

Thank you for your understanding.

NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6789R-1 
 Symbol CG6789  Full Name CG6789 
 CG No CG6789  Old CG No CG6789 
 Synonyms CG6789 
 Accession No (Link to NCBI) NM_131977.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees male light tannning, female lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGGCCCAGTCGAATGCACAC 
 Primer Seq. 3'
aatctagaggtaccGGTAGCCAAGTTGCTTGCGTT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATGGCCCAGT CGAATGCACA CAATTTGGTC GAGTACAAGG CCGGCCGCAT GGTCCTTCTA 
0061 GGCAAGATGG TCGAACCCGA TGACCGCAAA GGACTGCTCT TTGTGCGCCG ATCCGCCGAT 
0121 GATAATCAGC TCCATATCCA CTGGATGGAT CGGCGTTCCG GGTCCGTTGA GCTGGATATT 
0181 GTAGCAACGC CGGGCGTCCT CGAGTTCCGT CGCATTGATC AGTGCAAAAC CGGTCGGGTT 
0241 TATGTCCTAA AGTATACACG ATCGACGCAG CGTTACTTTT TCNTGGATGC AGGAGCTGCA 
0301 GGCGGATGGG GATGCGTTAT TTTGTCAGCG GGTCAATGAA TTGATTGCCA GTGGTGAACG 
0361 CCAAAGGGAT GAGATTGCGG CGGCCGAGGG CGATATGGAT ACGGATGCGG ATCATACAAC 
0421 AGCACGACGC GGTTTCGGTG GCAGTGAGAA TCCTCAAATT CTGGAAGAGA TGCTGGTCGA 
0481 AACGCAAGCA ACTTGGCTAC C 
 in silico PCR Fragment
0001 ATGGCCCAGT CGAATGCACA CAATTTGGTC GAGTACAAGG CCGGCCGCAT GGTCCTTCTA 
0061 GGCAAGATGG TCGAACCCGA TGACCGCAAA GGACTGCTCT TTGTGCGCCG ATCCGCCGAT 
0121 GATAATCAGC TCCATATCCA CTGGATGGAT CGGCGTTCCG GGTCCGTTGA GCTGGATATT 
0181 GTAGCAACGC CGGGCGTCCT CGAGTTCCGT CGCATTGATC AGTGCAAAAC CGGTCGGGTT 
0241 TATGTCCTAA AGTATACACG ATCGACGCAG CGTTACTTTT TC-TGGATGC AGGAGCTGCA 
0301 GGCGGATGGG GATGCGTTAT TTTGTCAGCG GGTCAATGAA TTGATTGCCA GTGGTGAACG 
0361 CCAAAGGGAT GAGATTGCGG CGGCCGAGGG CGATATGGAT ACGGATGCGG ATCATACAAC 
0421 AGCACGACGC GGTTTCGGTG GCAGTGAGAA TCCTCAAATT CTGGAAGAGA TGCTGGTCGA 
0481 AACGCAAGCA ACTTGGCTAC C 
 Assemble Data

6789R-1.IR_full       1   ATGGCCCAGTCGAATGCACACAATTTGGTCGAGTACAAGGCCGGCCGCATGGTCCTTCTA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6789R-1.in silico     1   ATGGCCCAGTCGAATGCACACAATTTGGTCGAGTACAAGGCCGGCCGCATGGTCCTTCTA 60


6789R-1.IR_full       61  GGCAAGATGGTCGAACCCGATGACCGCAAAGGACTGCTCTTTGTGCGCCGATCCGCCGAT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6789R-1.in silico     61  GGCAAGATGGTCGAACCCGATGACCGCAAAGGACTGCTCTTTGTGCGCCGATCCGCCGAT 120


6789R-1.IR_full       121 GATAATCAGCTCCATATCCACTGGATGGATCGGCGTTCCGGGTCCGTTGAGCTGGATATT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6789R-1.in silico     121 GATAATCAGCTCCATATCCACTGGATGGATCGGCGTTCCGGGTCCGTTGAGCTGGATATT 180


6789R-1.IR_full       181 GTAGCAACGCCGGGCGTCCTCGAGTTCCGTCGCATTGATCAGTGCAAAACCGGTCGGGTT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6789R-1.in silico     181 GTAGCAACGCCGGGCGTCCTCGAGTTCCGTCGCATTGATCAGTGCAAAACCGGTCGGGTT 240


6789R-1.IR_full       241 TATGTCCTAAAGTATACACGATCGACGCAGCGTTACTTTTTCNTGGATGCAGGAGCTGCA 300
                          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
6789R-1.in silico     241 TATGTCCTAAAGTATACACGATCGACGCAGCGTTACTTTTTC-TGGATGCAGGAGCTGCA 300


6789R-1.IR_full       301 GGCGGATGGGGATGCGTTATTTTGTCAGCGGGTCAATGAATTGATTGCCAGTGGTGAACG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6789R-1.in silico     301 GGCGGATGGGGATGCGTTATTTTGTCAGCGGGTCAATGAATTGATTGCCAGTGGTGAACG 360


6789R-1.IR_full       361 CCAAAGGGATGAGATTGCGGCGGCCGAGGGCGATATGGATACGGATGCGGATCATACAAC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6789R-1.in silico     361 CCAAAGGGATGAGATTGCGGCGGCCGAGGGCGATATGGATACGGATGCGGATCATACAAC 420


6789R-1.IR_full       421 AGCACGACGCGGTTTCGGTGGCAGTGAGAATCCTCAAATTCTGGAAGAGATGCTGGTCGA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6789R-1.in silico     421 AGCACGACGCGGTTTCGGTGGCAGTGAGAATCCTCAAATTCTGGAAGAGATGCTGGTCGA 480


6789R-1.IR_full       481 AACGCAAGCAACTTGGCTACC 501
                          |||||||||||||||||||||
6789R-1.in silico     481 AACGCAAGCAACTTGGCTACC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_131977.1  CG6789-RA (CG6789), mRNA 
0   NM_206374.1  CG7450-RB, transcript variant B (CrebA), mRNA 
0   NM_079363.3  CG7450-RA, transcript variant A (CrebA), mRNA 
0   NM_166790.2  CG32019-RA, transcript variant A (bt), mRNA 
0   NM_205877.1  CG32019-RD, transcript variant D (bt), mRNA 
0   NM_205876.1  CG32019-RC, transcript variant C (bt), mRNA 
0   NM_205875.1  CG32019-RE, transcript variant E (bt), mRNA 
0   NM_165080.1  CG31771-RA (CG31771), mRNA 
0   13  NM_133154.2  CG12199-RA, transcript variant A (kek5), mRNA 
0   13  NM_167647.2  CG12199-RB, transcript variant B (kek5), mRNA 
0   11  NM_167299.1  CG2446-RB, transcript variant B (CG2446), mRNA 
0   11  NM_132513.4  CG2446-RC, transcript variant C (CG2446), mRNA 
0   11  NM_167298.1  CG2446-RA, transcript variant A (CG2446), mRNA 
0   11  NM_167301.1  CG2446-RE, transcript variant E (CG2446), mRNA 
0   11  NM_167300.1  CG2446-RD, transcript variant D (CG2446), mRNA 
0   NM_139643.1  CG11347-RA, transcript variant A (CG11347), mRNA 
0   NM_136647.2  CG8809-RA (Camta), mRNA 
0   NM_143316.2  CG5586-RB (Tusp), mRNA 
0   NM_170523.2  CG1322-RA, transcript variant A (zfh1), mRNA 
0   NM_142484.1  CG7705-RA, transcript variant A (CG7705), mRNA 
0   NM_170522.2  CG1322-RC, transcript variant C (zfh1), mRNA 
0   NM_168157.1  CG12755-RB, transcript variant B (l(3)mbn), mRNA 
0   NM_001014570.1  CG12755-RC, transcript variant C (l(3)mbn), mRNA 
0   NM_169831.1  CG7705-RB, transcript variant B (CG7705), mRNA 
0   NM_057502.2  CG1322-RB, transcript variant B (zfh1), mRNA 
0   10  NM_137073.2  CG13349-RA, transcript variant A (CG13349), mRNA 
0   10  NM_166025.1  CG13349-RB, transcript variant B (CG13349), mRNA 
0   NM_135505.2  CG4839-RA, transcript variant A (CG4839), mRNA 
0   NM_164890.1  CG4839-RB, transcript variant B (CG4839), mRNA 
0   NM_132961.2  CG4955-RA (CG4955), mRNA 

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